Oryctolagus cuniculus (rabbit): 100341361
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Entry
100341361 CDS
T03373
Gene name
SMG5
Definition
(RefSeq) SMG5, nonsense mediated mRNA decay factor
KO
K11125
protein SMG5
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100341361 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100341361 (SMG5)
03032 DNA replication proteins [BR:
ocu03032
]
100341361 (SMG5)
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100341361 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
100341361 (SMG5)
DNA replication proteins [BR:
ocu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
100341361 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
100341361
NCBI-ProteinID:
XP_008262537
Ensembl:
ENSOCUG00000012886
LinkDB
All DBs
Position
13
AA seq
1016 aa
AA seq
DB search
MSQGPPTGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSRKRGKDIKRLLVNFMYLQSLLQP
KSSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVI
ICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PESKEPLEKEEEPEPEPPSPAPQAEEGRKSRKFSRLSCLRRRRHPPKAGDDSDLSEGFES
DSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDMEDEEGTRSPAPE
PPRARSEAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPSTEAHA
LASRGPCVNGDVEKPAEPASEEGSESEGSESSGRSCRNERSVQEKLQVLMAEGLLPAVKV
FLDWLRTNPDLIIVCAQSSQSLWNRLSVLLNLLPAAGELQESGLGLCPEVQDLLEACELP
ELPSSLLLPEDMALRNLPPLRAAHTRFSFDTDRPLLSVLEESVVRICCIRSFGHFVARLQ
GSILQFNPEVGIFISIAQSEQESLLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQL
EGSLQQPRAQSAMSPYLIPDTQALCHHLPLIRQLAASGRFIVLIPRTVIDGLDLLKKEHP
GARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLTQG
AGEEDPSGMVTIVTGLPLDNPSALSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccacgggggagagcagcgagcccgaagcaaaggtcctccacact
aagcggctttaccgggctgtggtggaggctgtgcatcgacttgatctcatcctttgcaac
aaaaccgcttatcaagaagtgttcaagccggagaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagcttatgttcctgcacccagtggactatgggaggaaggctgaggag
cttctgtggagaaaggtgtactatgaagttatccagcttatcaagactaacaaaaagcac
atccacagccggagcactttggaatgtgcctacaggactcacctggtcgctggcattggc
ttctaccagcatctcctcctctacatccagtcccactaccagctcgaactgcagtgctgc
atcgactggacccacgtcaccgaccccctcataggatgcaagaagccagtgtctgcctca
gggaaggagatggactgggcgcagatggcgtgccaccgatgtctggtgtacctgggagat
ctgtcgcgatatcagaatgaattggctggtgtagacactgagctgctagctgagaggttt
tactaccaagctctgtcagtggctccccagattggaatgcccttcaaccagctgggcacg
cttgcaggcagcaagtactataacgtagaagccatgtattgctacctgcgctgcatccag
tcggaagtgtcctttgaaggagcctatgggaacctcaagcggctgtatgacaaggcagcc
aaaatgtaccaccagctgaagaagtgtgagacccggaaactgtcccccagcaggaagcgc
ggtaaggacatcaagaggctgctggtgaacttcatgtacctgcagagcctcctgcagccc
aagagcagctccgtggactcagagctgacctcgctttgccagtcggtcctggaagacttc
aacctctgtctcttctacctgccctcctcgcccaacctcagcctggccagtgaggacgag
gaggagtacgagagtggatatgccttcctcccggaccttctcatctttcagatggtcatc
atctgccttatgggggtgcacagcttgaagcgagcaggatccaagcagtacagcgcagcc
attgccttcaccttggccctgttttcccacctcgtcaatcatgtcaacatacggctgcag
gcggagctggaggagggcgagaaccctgtcccggccttccagagtgatggcacagatgaa
ccagaatctaaggaacccctggaaaaagaagaggagccagaacctgagcctccttcccct
gccccacaagcggaggagggccgaaagagccggaagttctcccgcctctcctgcctccgc
cgccgccgccacccacccaaagccggtgatgacagtgacctgagtgagggcttcgaatcg
gattcaagccatgactcggcccgggccagcgagggctcagacagtggctctgacaagagt
cttgaaggtgggggcacagcctttgatgctgagacagactcagagatgaacagccaggag
tcccgatccgacctggaagacatggaggatgaggaggggacacggtccccggccccggag
ccccctcgggccagatcagaggctcccgagtccctcaacggcccactcggccccagcgag
gcaagcattgccagcaacctacaagccatgtccacccagatgttccagaccaagcgctgc
ttccgcctggcgcccaccttcagcaacctgctcctgcagcccagcaccgaagcgcatgcc
ttggccagccgagggccgtgtgtcaacggggatgtggagaagcctgcagagccagcctcc
gaagaaggctccgagtcagaggggagcgagtccagtgggcgttcctgtcggaacgagcgc
agcgtccaagagaagctgcaggtgctgatggccgaaggcctgcttcccgccgtgaaggtc
ttcctggactggctgcgcaccaaccccgacctcatcatcgtgtgtgcgcagagttcccag
agcctctggaaccgcctgtccgtgttgctgaatctactgccagccgctggcgaacttcag
gagtctgggctgggcctgtgtcctgaggtccaggatctgctcgaggcttgtgaactgcct
gagctcccctccagcctgctgctgccagaggacatggccctccgaaacctgcctccgctg
cgggctgcgcacacgcgcttcagcttcgacacggaccggcccctgctcagcgtcctagag
gagtcggtggtgcgcatctgctgcatccgcagctttgggcacttcgtcgcccgcctgcaa
ggcagcatcctgcagttcaaccccgaggtgggcatcttcatcagcatcgcccagtctgag
caggagagcctgctgcagcaggcccaggcccagttccgcatggcgcaggaggaggcgcga
cggaacaggctgatgagggacatggctcagctgcggctccagctcgaagtgtctcagctg
gagggcagcttgcagcagcccagggcccagtcggccatgtctccctacctcatccccgac
acccaggccctctgccaccacctcccgctcatccgccagctggccgccagcggccgtttc
atcgtcctgataccgaggacagtgatcgatggcctggatttgctgaagaaggagcacccc
ggggcccgggacgggatacgttacctggaggcagagtttaaaaaaggaaacaggtacatt
cgctgccagaaggaggtgggaaagagctttgagcgccataagctgaagaggcaggatgca
gatgcctggaccctctataagatcctggacagctgcaaacagctgactctgacccagggg
gcaggggaagaggacccgagtggcatggtgaccatcgtcacgggccttccactggacaac
cccagtgcgctgtcaggccccatgcaggcagccctgcaggccgctgcccacgccagcgtg
gacatcaagaacgttctagacttctacaagcagtggaaggagattggttga
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integrated database retrieval system
