KEGG   Oryctolagus cuniculus (rabbit): 100344941Help
Entry
100344941         CDS       T03373                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03410  Base excision repair
Module
ocu_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100344941 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100344941 (LIG3)
Enzymes [BR:ocu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     100344941 (LIG3)
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     100344941 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 100344941
NCBI-ProteinID: XP_002719278
Ensembl: ENSOCUG00000006305
UniProt: G1SQQ9
LinkDB All DBs
Position
19
AA seq 1011 aa AA seqDB search
MTVAFKILFPESLRALGRKELCLFREQHRWPDLKLFSWWSETDVLRGRCLLPRRKPVPSF
GEGRLRARATCLVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQ
HITDLSSKAASTPKKKAVVQAKLTSTGQVTSPVKGASLVTNPNPRKFSGFSAKPNNSGQN
PPSSPAPTTSLSSSKCDPKHKDCLLREFRKLCAMVADNPSYNTKTQIIQNFLRKGSTGDG
FRGDTYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGCKRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKV
AHFKDYIPQAFPGGHSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKLLHDNMVEIPNRIMFSEMKRVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
SSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADF
TVVAGDEGSSSTGGSSGENEGASGPAVSRKAPSKPSASARKAEGKQSNANGKGGNKLSTK
HSPVKLEEKLARKSSPVKVGEKRKATDEPPCQAKVLLDIFTGVRLYLPPSTPDFSRLRRY
FVAFNGDLVQEFDMASATHVLGSRDKNSEAQLVSPEWIWACIRKRRLVAPC
NT seq 3036 nt NT seq  +upstreamnt  +downstreamnt
atgactgtggctttcaagatcctcttcccagaaagtctccgagcccttggccgaaaagaa
ctgtgcctgttccgagaacagcatcgctggcctgacctcaaactgtttagctggtggtcg
gaaacagatgtgctccgtgggcgctgcctcctcccgagaagaaagcctgttccgtcattt
ggcgaaggtcgtctaagagcacgtgccacctgccttgttttcctgccagggtcgcatgtg
ggactctgcagtggcccctgtgagatggctgagcaacggttctgcgtggactacgccaag
cgtggcacagctggctgcaaaaaatgcaaggaaaagattgtaaagggcgtttgccgaatt
ggcaaagtggtgcccaatcccttttcagagtccggaggtgatatgaaagagtggtaccac
attaaatgcatgtttgagaagctggagcgggcccgggccaccacgaaaaaaatcgaggac
ctcacagagctggaaggctgggaagagctggaagataatgagaaggagcagataacccag
cacattacagatctgtcttccaaggcagcaagcacaccaaagaagaaagctgtcgtccag
gcaaagttgacatccactggccaggtgacatccccagtgaaaggagcctcgttagtcacc
aaccccaatccacggaaattttctggcttttcagctaagcccaacaactctgggcagaac
ccaccctcaagccctgcccctacaacaagtttgtcctcaagcaaatgtgaccccaaacac
aaggattgtctgctgcgggagtttcgcaagttgtgtgccatggtggccgataacccgagc
tacaacacaaagacccagatcatccagaacttcctgcggaaaggctcaacaggagatggt
ttccgcggtgatacgtacctaacagtgaagctcctgttgccgggggtcattaagagtgtt
tacaacttgaatgacaagcagattgtgaagctcttcagccgcatttttaactgcaaccca
gacgatatggcgcgggacctagagcagggtgacgtgtcagagacaatcagagtcttcttt
gagcagagcaagtctttccccccagctgccaagagcctccttaccatccaggaagtggat
gaattcctcctgcggctctccaagctcaccaaagaagatgaacagcagcaggccctacag
gacatcgcctccaggtgcacagccaatgaccttaagtgcatcatcaggctgatcaaacat
gatctgaagatgaactcgggtgcaaagcatgtgttagatgccctcgaccccaatgcctat
gaagccttcaaagcctcgcgcaacctgcaggacgtggtggagcgggtcctgcgcaatgag
caggaggtggagaaggagccaggctgcaaacgggctctgagcgtccaggcctctctgatg
acgcctgtgcagcccatgctggctgaggcctgcaagtccatcgagtacgcaatgaagaag
tgtcccaacggcatgttctccgagatcaagtacgatggcgagcgagtccaggtgcataag
aatggcgaccacttcagctacttcagccgcagtctcaaacccgtcctgcctcacaaggtg
gctcactttaaggactacatccctcaggctttccctgggggccacagcatgatcttggac
tctgaggtgctcctgattgacaacaacacaggaaaaccactgccttttgggactctggga
gtgcacaagaaagccgccttccaagacgctaatgtgtgcctgtttgtttttgactgtatc
tacttcaatgatgtcagtttgatggatcgacctctgtgtgagcggcggaagcttcttcat
gacaacatggttgaaattcccaacaggatcatgttctcagaaatgaagcgagtcacaaaa
gcttcggacttggccgacatgataaaccgggtgatccgggagggcttggaagggctggtg
ctgaaggatgtgaagggtacatacgagcctgggaagcggcactggctgaaagtgaagaaa
gactatttgaacgagggtgccatggccgacacggctgacctggtcgtccttggggccttc
tatgggcaagggagcaaaggtggcatgatgtcgatcttcctcatgggttgttatgacccc
agcagccagaagtggtgcacggtcaccaagtgtgcgggaggccatgacgacgcgacactt
gcccgcctgcagaaggaactggacatggtaaaaataagcaaggatcccagcaaaataccc
agctggctgaaaatcaacaagatctactatcctgacttcattgttccagacccaaagaaa
gctgctgtgtgggagatcacaggggctgaattctccaagtctgaagctcacacggctgac
gggatctccatccgattccctcgctgcacacgaatccgggacgataaggactggaaatct
gccactaacctcccacaactcaaggaactgtatcagctgtccaaggagaaagcagacttc
accgtagtggctggagatgaggggagctcctctacagggggcagcagtggtgagaatgag
ggtgcctccggacctgctgtgtcccgcaaagcccccagcaagccctctgcgagtgccagg
aaggctgaagggaagcagagtaatgccaacggcaaaggcggcaacaagctgagcacaaag
cattcccctgtgaaactggaggagaagctagccaggaagtcttccccggtgaaagtaggg
gagaagcggaaagctactgatgagcccccgtgccaagcaaaggtgctgctggacatcttc
actggggtgcggctctacttgccaccctccacaccagacttcagccgcctcagacgctat
tttgtggcattcaacggagacctggtacaggaatttgacatggcctcagccacacacgtg
ctgggtagcagggacaagaattctgaggcccagctggtctccccagagtggatttgggca
tgcatccggaaacggaggctggtagctccctgctag

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