Oryctolagus cuniculus (rabbit): 100346072 Help Entry 100346072         CDS       T03373                                  Name (RefSeq) collagen alpha-1(XV) chain   KO K08135   collagen type XV alpha Organism ocu  Oryctolagus cuniculus (rabbit) Pathway ocu04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:ocu00001]  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     100346072  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00535 Proteoglycans [BR:ocu00535]     100346072 Proteoglycans [BR:ocu00535]  Extracellular matrix (ECM) proteoglycans   Basement membrane proteoglycans    100346072 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Endostatin Collagen Collagen_trimer Laminin_G_3 3keto-disac_hyd Motif Other DBs NCBI-GeneID:  100346072 NCBI-ProteinID:  XP_051699624 Ensembl:  ENSOCUG00000016236 LinkDB All DBs Position 1:complement(28312776..28422869) Genome browser AA seq 1374 aa AA seqDB search MAPRKNGQGWRLLWLLPLSALLSAVTQTRAATESVSQGHLDLTELIGVPLPSSVSFVTGY GGFPAYSFGPGANVGRPARTLLPPTFFQDFAISVTVKPSGGRGGVLFAITDAFQKVIYLG LRLSGVEDGHQRVILYYTEPGSHVSHEAAAFEVPVMTDKWNHFAVTVQGEEVTLLLDCED HGHALFQRSSRPLAFEPSAGIFVGSAGATGLERFIGSIQRLTLHPDPRTPEELCEAEEAS ASGETSGLQEADGVAEILEAVTYTQVPPQEAKVEPLNLPSIPTSASEDPELSGEPVPEGT PDATTLSAIQHRSPEPGSGEMLNDTLEGLHVVDEDPAAAGTGSGDGSFLDVTEGKGLVAA TAGEAEGPGSTPGEAEATEGPTLAMSSPDPKEGVTPGPDQEEGSAATAAVEAEASGAPTE GSPLSISTQTLGEEATLGPQGGESVATAAAATQVPLGTFEEEEASGSPTDGLGPLVLSPS PAQAVTSAPGDDGEDLAAATTWEPLISAEEEEPASAPPAAPLPLPTPTAAPERGVTLAHV HVEMEGQAAPRGEEDEAEEGLPGSPGTSAPAGPTVGAEAEGSGLGWDSDAGSGSGDLVGS EELLRGPPGPPGPPGLPGIPGEPGADVFMGPPGSPGEDGVAGEPGPPGPEGQPGLDGATG LPGMKGEKGARGPVGSAGEKGDPGNRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGC TMGPGFEDTEGSGSVRLLSEPRLFGPTASSGPKGEKGDQGPKGDRGKDGTSTVGPPGPRG PPGRVEVLSASLINITHGAVNFSDIPELMGPPGPDGLPGLPGFPGPRGPKGDTGVPGFPG LKGEQGEKGEPGAILTGDVDLEKLRGEKGEPGVHGAPGPMGPKGPPGHKGEFGLPGRPGR PGLNGPKGAKGDRGLMMPGPPGLPGPPGPPGPPGAVVNIKGAVFPVPVRPHCKTPVGTTH SGDPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHILSSLKGENGDR GFKGEKGDANDNFFVSGPPGLPGSPGLVGQKGETVVGPQGPPGIPGLPGPPGFGRPGAPG PPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGTRNLVTALSNMDDMLRHAHLVIEGTF IYLKDSAEFFIRVRDGWKKLQLGELIPIPADSLPPPALSSNPHQPQPQPPLNPVLSANYE RPALHLVALNTPFSGDIRADFQCFQQARAAGLLSTYRAFLSTHLQDLSSIVRKAERYSLP IVNLKGQVLFNNWDSIFSGHGGQFNARVPIYSFDGRDIMADPSWPQKVVWHGSSTHGVRL VDKYCEAWRTSDVAVTGLASPLSTGKILDQKAYSCANRLIVLCIENSFMTDARK NT seq 4125 nt NT seq  +upstreamnt  +downstreamnt atggcgccaagaaagaacgggcagggctggcgcctgctgtggctgttgccgctctccgcg ctcctctccgctgtcactcagacccgcgcggcgacagagtcagtctcccagggccatctg gacctcacggagctcatcggcgtccctctgccctcatcagtgtcttttgtcacgggctac ggtggcttcccggcctacagctttgggcctggggccaatgtcggccgcccggccaggacc ctgctgccccccaccttcttccaggactttgccatcagtgtcacggtgaagcccagcggc ggccgtggtggggtgctctttgccatcaccgatgccttccagaaggtcatctacctgggc ctgcggctctcgggcgtggaggacggccaccagcgggtcatcctctactacacggagccc ggctcgcacgtgtcccatgaggccgctgccttcgaggtgcctgtgatgaccgacaagtgg aaccacttcgcggtgaccgtgcagggcgaggaggtgacactgctcctggactgtgaagat catggccacgcccttttccagaggtcctcccggcctctggctttcgagcccagcgcaggg atcttcgtgggcagcgccggggccacggggctggagagattcattggctccatccagcgg ctcaccctccacccggaccccaggactcccgaggagctgtgtgaagctgaggaggcatcg gcgtcgggagagaccagtgggcttcaagaggcagacggggtcgcggagatcttagaagcc gtcacctacacccaagtgccgccacaggaagccaaagttgaacccctcaacttgccttcc atcccaacctctgcatctgaggacccagagctctcgggtgagcccgtgcccgaggggact ccggacgccaccaccctcagcgccatccagcacaggagccctgagccagggtctggtgag atgctgaatgacacactggaggggcttcacgtggtggatgaagaccccgcggctgctggc actggctccggcgatgggtccttccttgatgtcaccgaaggaaagggcttagtggcagca actgcaggggaggccgaggggcccggcagcacccctggggaagcagaggccactgagggg cccaccctggccatgtccagcccagaccctaaggaaggggtaaccccaggtcccgatcag gaagaaggttcagcagccacagcagcggtggaggccgaggccagcggggcgcccactgag gggtcccccctctccatatccacccagaccctcggggaagaggccactctgggtccacaa ggtggagaaagtgtagcaacagctgcagctgcaacccaagtgcccctcggcactttcgag gaagaggaagccagcgggtcccccaccgatggcctgggacccctcgtccttagcccaagc cctgcgcaagcggtcacttctgcaccgggcgatgatggagaagacttggcggcagccacc acctgggagccccttatctcagctgaggaagaggagcccgccagtgccccccctgcggct ccactgccactccccactcccacggcggctcctgagcgaggggtcactctggctcacgta catgtggaaatggaaggacaagccgcacccagaggagaagaggatgaggctgaggagggc cttcccgggtcccccggaacttctgcacctgctggacccacggtgggagcagaggctgag ggctccggcctgggctgggactctgacgctggctccggctccggggacctggtgggcagt gaggagctgttgaggggtcccccagggcctccaggcccacctggcttacctgggattcca ggagaacctggggctgatgtcttcatgggaccccctggatctcctggtgaagatggagtt gctggtgaacctgggcccccgggccccgaaggacagcctggacttgacggagccaccggc cttcccgggatgaaaggggagaagggagcaagaggacctgttggctcagctggcgagaag ggtgaccctggcaacagaggcttacccggaccccctgggaaaaacggacaagtcggcact cctggggtcatgggacccccagggcctcctggacccccagggcccccaggccctggctgt accatgggacctggattcgaggataccgaaggctccggaagtgtcaggctgctgagtgaa ccccgactcttcggccccacggcttccagtggtcccaaaggagaaaagggagaccaggga cccaagggtgacagaggcaaggatggaaccagcactgtggggccccctgggcctaggggg ccccctgggcgcgtcgaggtcctgtctgcttccttgatcaacatcacccacggagccgtg aatttctcggacattcctgagctcatggggcctccggggcctgacgggctgcctgggctg ccgggatttccaggccctcgaggaccgaaaggcgacactggcgtgcctggatttccagga ctcaaaggagaacagggtgagaagggagagccaggtgccatcctgaccggggacgtggat ctggaaaagctacgtggagagaagggggagcccggagtgcacggggccccgggacccatg ggtcccaaaggacccccaggacacaaaggagaatttggcctccccggacggcctggtcgc ccaggactgaatggccccaagggcgccaaaggagatcgagggctcatgatgccgggccca cctggcttacctggccctccaggtcccccaggaccacctggagctgtggttaacatcaaa ggagccgttttcccagtacctgtccggccacactgcaaaacgccggttggcaccactcat tctggcgacccagaactcatcaccttccacggtgttaaaggagagaaaggatcctggggt cttcctggatcaaagggagaaaaaggtgaccaaggagcccagggaccaccaggccctcct gttgatcctgcttacctgagacatatcctgagcagcttgaagggggagaatggagacagg ggattcaaaggagaaaaaggcgatgcaaatgacaacttctttgtatccgggcctccgggc ctgccgggaagtccgggtctggttggccaaaaaggggagactgttgttggcccccaagga cccccgggtattcctggcctgcctgggccccctggatttggaagacctggtgctcccgga cccccaggacccccagggccaccaggaccgccggctatcctaggagcagccgtggccctg cctggtccacctggccctccagggcaaccagggcttccaggaaccagaaacttggtcaca gcactcagcaacatggacgacatgctgcggcacgcacacttggtaatagaggggacgttc atctacctgaaggacagcgctgagtttttcattcgcgtccgagatggctggaaaaaacta cagctgggggagctgatccccatcccggccgacagccttccgccccctgcgctctccagc aacccacatcagcctcagcctcaacctccactgaaccctgttctgagtgccaattatgag agacctgctctgcacctggtggccctgaacacgccattttcaggggacattcgagctgat tttcagtgcttccagcaggccagggctgcaggcctgttgtcaacctaccgagccttctta tccacccacctgcaagatctctcctccattgtgaggaaggcagagcgatacagccttcct atagtgaacctcaagggccaagtactttttaataactgggactcgattttttctggccat ggaggtcagttcaacgcacgtgttccgatttactccttcgacggtcgagacatcatggca gatccttcttggccccagaaggtcgtctggcacggctccagcacgcatggcgtccggctt gtggacaagtactgtgaagcgtggcgaacctcggacgtggccgtcacgggattggcctcc ccgctgagcacagggaagatcctggaccagaaagcctacagctgtgccaaccggctgatt gttctgtgtatcgaaaacagtttcatgacagatgctaggaagtaa

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