Oryctolagus cuniculus (rabbit): 100346821
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Entry
100346821 CDS
T03373
Gene name
CPSF2
Definition
(RefSeq) cleavage and polyadenylation specific factor 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100346821 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100346821 (CPSF2)
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100346821 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
100346821
NCBI-ProteinID:
XP_017204845
Ensembl:
ENSOCUG00000005713
UniProt:
G1SPH7
LinkDB
All DBs
Position
20
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDA
EMQVDAPSDSSVIAQQKAMKSLFGDDEKEAGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattaactaccctctctggggtccaagaagagtctgctctttgc
tatcttctccaagttgatgagttcagatttttgctggactgtggctgggatgaacacttc
tcgatggatattatagattccttgaggaagcacgttcaccagatcgacgcggtgctgctg
tcccacccggatcctctgcatctcggggccctcccatatgctgtgggcaagctggggctg
aactgcgccatctacgccaccatccctgtgtataaaatgggacagatgttcatgtatgat
ctctaccagtctcggcacaataccgaagattttacgctttttacgttagatgatgtggat
gcagcctttgacaaaatacagcagctaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggtttgtctatcacacctctgccagccggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaggaggagattgtgtatgctgttgacttcaaccacaagagg
gagatccacttaaatggatgctccctggaaatgctaagcagaccctccctacttatcaca
gattcgtttaatgctacgtatgtgcagcccagaagaaaacagagagatgagcagcttctg
acgaatgtcctggaaacgctgcgaggtgatggaaatgtgttaatagcagtggatactgca
ggccgggttttggagcttgctcagctccttgatcagatttggagaactaaagacgcaggc
ttgggtgtttactcactggcactcctaaataatgtcagttataacgtggtggagttttct
aagtcccaggtagaatggatgagtgacaaattgatgagatgttttgaagacaaaagaaat
aatccatttcagtttcgccatctttctttatgccatggtctttctgacttggcgcgagtt
cctagccccaaagttgtgcttgccagccagcccgacttggagtgtggattctcaagggat
ctctttattcagtggtgtcaggaccctaagaactcaatcattctaacttacagaaccact
cctggcaccttagcgcgtttcctaattgacaatccttctgaaaaagttacagaaatagag
ttgcggaaacgcgtgaagcttgaagggaaagaacttgaagaatacttggagaaagagaaa
ctaaagaaggaagctgctaaaaagcttgagcaatccaaagaggcggacatagactccagt
gacgagagtgacgtggaggaggacatcgaccagccgtcggctcacaagatgaagcacgac
ctgatgatgaagggggagggcagtcggaaaggaagtttcttcaaacaggcaaagaagtcc
taccccatgttccctgctcccgaggagagaattaagtgggatgagtatggcgaaattatc
aaaccagaggatttcttagtgccagaacttcaagctactgaggaagagaaaagcaaatta
gaatctggtctgacaaatggagacgaacccatggatcaggacttgtctgatgttcctact
aagtgtatttccacaacagagtccattgaaataaaagccagagtcacctacatagactac
gaaggccgctctgacggggattccatcaagaaaatcattaaccagatgaagccccggcag
ctcatcatcgtccatgggcccccggaggccagccaggacctggccgagtgctgccgcgcg
tttggcgggaaggacatcaaagtgtacatgccgaagctccatgaaaccgtggatgccacc
agtgagacacacatctaccaggtgaggttaaaagactccctcgtcagctcccttcagttt
tgtaaggccaaagacgcggagttggcctggatagacggtgtgctggacatgagagtctcc
aaggtggacacgggagttattttggaagaaggggagctgaaggacgacggagaggacgct
gagatgcaggtggacgccccttccgactcgagcgtgatcgcgcagcagaaggccatgaag
agcctgttcggggatgacgagaaggaggcgggggaggagagtgagatcatccccactttg
gagcccctgccgccgcacgaggttccaggacatcagtcagttttcatgaatgaaccaagg
ctctcagacttcaagcaagtccttttacgggagggaattcaagcggagtttgtcggaggt
gtacttgtttgcaacaaccaagtagcagtccgaagaacggaaactggacgcattggacta
gaaggctgcctttgtcaagacttctataggataagagaccttttgtacgaacagtacgcc
atcgtgtga
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