Oryctolagus cuniculus (rabbit): 100348044 Help Entry 100348044         CDS       T03373                                  Gene name SYMPK Definition (RefSeq) symplekin   KO K06100   symplekin Organism ocu  Oryctolagus cuniculus (rabbit) Pathway ocu03015   mRNA surveillance pathway ocu04530   Tight junction Brite KEGG Orthology (KO) [BR:ocu00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     100348044 (SYMPK)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     100348044 (SYMPK)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ocu03021]     100348044 (SYMPK)    03019 Messenger RNA biogenesis [BR:ocu03019]     100348044 (SYMPK) Transcription machinery [BR:ocu03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      100348044 (SYMPK) Messenger RNA biogenesis [BR:ocu03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      100348044 (SYMPK) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C DUF3453 DUF4667 Cnd1 DUF3385 SR-25 Motif Other DBs NCBI-GeneID:  100348044 NCBI-ProteinID:  XP_008251057 Ensembl:  ENSOCUG00000005511 LinkDB All DBs Position Un AA seq 1301 aa AA seqDB search MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITSDSKITVLRQVQE LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR THAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQHSVLWEEGKAALEQLL KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN LKLHLLSVLKHPASLEFQAQITTLLVDLGAPQAEIARNMPSSKDARKRPRDDSDSALKKM KLEPNLGEDDEDKDLEPGPSGTSKASAQLSGQSDTDITAEFLQPLLTPDNVANLVLISMV YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK VVKPESVLIKRRLSAQGQAISVVGSLSAMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR KKIFRLSDVLKPLTDAQVEAMKLSAVKRILRAEKAVACSGAAQVRVKILASLVTQFDSGL KAEVLAFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIRLLSGLQEKPDQK DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA PWTEETVKQCLHLYLALLPHNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE LLLLVEHCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR SFTPHQQAHIPNSIMAILEASGKQEPEAKEAPAGPMEEDDLEPLALAPAPAPAPAPAPAP AAAPRPPQDLIGLRLAQEKALKRQLEEEQKLKPAPPAPSSTSSSSSSSSSSSSSSSSSTS SSSSSNSARPGPPPAEEAIDFRDEGPECETPGIFISVDVDSGLSEAALLDSSLEGPLPKE AAASGKEERSPQALAPAADEAVKTPSPAAEEAGEPEAKGHS NT seq 3906 nt NT seq  +upstreamnt  +downstreamnt atggcgagtggcagcggggacagtgtcacccgccggagcgtggcgtcacagttcttcacg caagaggagggcccaggcattgatggcatgaccacctccgagagggtggtggatctcctg aaccaggcggcgctgatcaccagtgactcgaagatcacagtgctcaggcaggtccaggag ctgatcatcaacaaagaccccacgctgctggacaacttcctggatgagatcatcgctttc caagcagacaagtccatcgaagtgcgcaagtttgtcatcggcttcattgaggaggcatgc aagcgggacatcgaattactgctgaagctgatcgcgaacctcaacatgctgctgagggac gagaacgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc ctgcagtggatggtgaagtcacgggtcatcagtgagctccaggaggcctgctgggacatg gtgtctgccatggccggggacatcatcctgctcttggactctgacaacgatggcatccgc acccacgccatcaagtttgtggagggtctcattgtcaccctgtcgccccgcatggccgac tcggagatacccagacgtcaggaacatgacatcagcctggaccgcatccctcgtgaccac ccctacatccagcacagtgtgctgtgggaagaggggaaggcggccttggagcagcttctc aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcgctgggctccctc gccaacatcgcccgccagagacccatgttcatgtccgaggtgatccaagcctacgagacc ctgcacgccaacctcccgccgacgctggccaagtctcaggtgagcagcgtgcgcaagaac ctcaagctgcacctgctgagcgtgctcaagcacccggcctccctggagttccaggcccag atcaccaccctgctggtggacctgggcgcgccgcaggccgagatcgcccgcaacatgccc agcagcaaggacgcccgcaagcggccgcgcgacgactcggattctgcgctgaagaagatg aagctggagcccaacctgggggaagacgacgaggacaaggacttagagccaggcccatcg gggacctccaaggcctcggcccagctctcaggccagtcagacacagacatcacagccgag ttcctgcagcctctgctgacgcccgacaatgtggccaatctggtcctcatcagcatggtg tacctgcctgaggccatgcccgcctccttccaagccatctacacccccgtggagtcagcc ggcaccgaagcccagatcaagcacctggctcggctcatggccacacagatgacggccgca ggactggggcctggcgtggagcagaccaagcagtgcaaggaggagcccaaggaggagaag gtggtgaagccagagagcgtcctgatcaagcggcgcctgtctgctcagggccaagccatc tcggtggtggggtccctgagcgccatgtcccccctggaggaggaggtgccccaggccaag aggaggccggagcccatcatccctgtgacgcagcctcggctggcgggcgccggcgggcgt aagaaaatcttccgtctaagcgacgtgctgaagcccctgaccgacgcccaggttgaggcc atgaagctgagtgctgtgaagcggatcctgcgggccgagaaggccgtggcctgcagtggg gcggcccaggtgcgcgtgaagatcctggccagcctggtgacacagtttgactcggggctg aaggccgaggtgctggccttcatcctggaggatgtgcgggcccgcctggacctggccttc gcctggctctaccaggagtacaacgcctacctggcagctggcgcctcgggcaccctggac aagtacgaggactgcctcatccgcctgctctccggccttcaggagaaaccggaccagaag gacgggatcttcaccaaggttgtgctggaggcgccgctgatcaccgagagtgccctggag gtgatccgcaagtactgcgaggacgagagtcgcacctacctgggcatgtccaccctccga gacctgatcttcaagcgcccgtcccgtcagttccagtacctgcatgtcctcctggacctg agctcccacgagaaggacaaggtgcgctcgcaggccctgctgttcatcaagcgcatgtac gagaaggagcagctgcgggagtacgtggagaagttcgccctcaactacctgcagctgctg gtgcaccccaacccaccctcggtgctcttcggggccgacaaggacacagaggtggcggcg ccctggaccgaggagacggtgaagcagtgcctgcacctctacctggccctcttgcctcac aaccacaagctgatccacgagctggccgccgtgtacaccgaggccatcgccgacatcaag cgcacggtgctgagggtcatcgagcagccgattcgagggatgggcatgaactccccagag ctgctgctgctggtggaacactgccccaagggggccgagacgctggtcacccgatgtctg cacagcctcacagacaaagtcccgccctccccggagctggtgaagcgggtccgcgacctg taccacaagcggctgccggacgtgcgcttcctcatccccgtgctgaacgggctggagaag aaggaggtgatccaggccctgcctaagctcatcaagctcaaccccatcgtggtgaaggag gtcttcaaccgcctgctgggcacccagcacggtgaggggaactcggccctgtcccccctg aaccccggagagctcctcatcgcgctgcacaacatcgactcggtgaaatgtgacatgaag tccatcatcaaagccaccaacctgtgcttcgcggagcggaacgtgtacacgtcggaggtg ctggccgtggtgatgcagcagctgatggaacagagccccctgcccatgctgctcatgcgg accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg tcccgcctcatcatgaagcaggtctggaagtaccccaaggtgtgggagggcttcatcaag tgctgccagcgcaccaagccccagagcttccaggtcatcctgcagctgccgccccagcag ctgggggccgtctttgacaagtgcccggagctccgcgagcccctgctggcccacgtccgc tccttcaccccccaccagcaagcacacatccccaactctatcatggccatcctggaggcc agcggcaagcaggagccagaggctaaggaggcacctgcggggcccatggaagaggacgac ctggagcccctggccctggccccggctccagctccggccccagccccggccccggccccg gccgcagccccgcggccccctcaggacctcatcggcctgcggctggctcaggagaaggcc ttgaagcggcagctggaggaggagcagaagctgaagcctgcaccccccgccccatcctcc acctcctcgtcctcctcctcctcctcgtcctcctcctcctcctcgtcctcctccacatcc tcctcctcctcctccaactctgcgcggccgggccctcccccggcggaagaagccatagat ttccgggacgaggggcccgagtgcgagacccccggcattttcatcagcgtggatgtggac tcggggctgagtgaggccgcgctgctggactccagcctcgaggggcccctgcccaaggag gcggcggccagcgggaaggaggagcggagcccccaggccctcgcccctgcagccgacgag gccgtgaagacccccagccctgccgccgaggaagcgggggagcccgaggccaaggggcac agctga

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