Oryctolagus cuniculus (rabbit): 100348988
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Entry
100348988 CDS
T03373
Name
(RefSeq) transcription factor SOX-5 isoform X4
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ocu
Oryctolagus cuniculus (rabbit)
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocu03000
]
100348988
Transcription factors [BR:
ocu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100348988
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
100348988
NCBI-ProteinID:
XP_008257749
Ensembl:
ENSOCUG00000011479
LinkDB
All DBs
Position
8:complement(94988163..96077580)
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AA seq
765 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPN
KPHSEEFQPVSLLTQETCGPRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQS
GEALSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAM
GSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFL
LPPGFSYKAGCSDPYPVQLIPTTMAAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLP
GIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMP
ALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLD
GKVAVVNSLGLNNCRAEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVS
ESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT
NLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQ
YFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGE
EPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggaa
gaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaac
aagcctcactctgaggaatttcagccagtttctctgctgacgcaagagacttgtggccct
aggactcccacttctcagcacaatacaatggaagttgatggcaataaagttatgtcttca
tttgccccacacaactcatctacctcacctcagaaggcagaagaaggtgggcggcagagt
ggcgaggccttgtccagcacggccctcgggacccccgagcgacgcaagggcagcttagcg
gacgttgtggacaccttgaagcagaggaaaatggaagagctcatcaaaaacgaaccggaa
gaaacccccagtattgaaaagctactctcaaaggactggaaagacaagcttcttgcaatg
ggatcagggaactttggcgaaataaaagggactcccgaaagcctcgctgagaaagagcgg
cagctcatggggatgatcaaccagctgaccagcctgcgagagcagctattggctgctcac
gatgagcagaagaaactggcggcatctcagatcgagaaacagcgccagcaaatggagttg
gccaagcagcagcaggaacagattgcaagacagcaacaacagcttctgcagcaacaacac
aaaatcaatctgcttcagcaacagatccagcaggttcaaggtcagctgccgccattaatg
atccccgtattccctcctgatcaacggaccctggctgcagctgcccagcaaggattcctc
cttcctccaggcttcagctataaggctggatgtagtgacccttaccctgttcagctgatc
ccaaccaccatggcagctgccgcggccgcagcaacaccaggcttaggcccactccaactg
cagcagttatatgctgcccagctagcggcaatgcaggtgtctccaggagggaagctgcca
ggcataccccaaggcaaccttggtgctgctgtatctcctaccagcattcacacagacaag
agcacaaacagcccaccacccaaaagcaaggatgaagtggcacagccactgaacctatca
gctaaacccaagacctctgatggcaaatcgcccacatcacccacctctccccatatgcca
gctctgagaataaacagtggggcaggtcccctcaaagcctctgtcccagcagcgttagct
agtccttcagccagagttagcacaataggttatttaaatgaccatgatgctgtcaccaag
gctatccaagaggctcggcagatgaaggagcaacttcggcgggaacagcaggtgcttgat
gggaaagtggctgttgtgaatagcttgggtctcaataactgccgagcagaaaaggaaaaa
acaacactggagagtctgactcagcaactggcagtgaaacagaatgaagaaggaaaattt
agccatgcaatgatggatttcaatatgagtggagattccgatggcagtgctggagtctcg
gaatcaagaatctatagggagtcccgggggcgtggcagcaatgagccccacataaagcgt
ccaatgaatgccttcatggtgtgggctaaagacgagcgcaggaaaatccttcaagccttt
cctgacatgcacaactctaacatcagcaagattctgggatcccgctggaaagctatgaca
aacctagagaaacagccatattatgaggagcaggcccgtctcagcaagcagcacctggag
aagtaccctgactacaagtacaagccccggcccaagcgcacctgtctcgtggatggcaaa
aagctgcgcatcggcgagtacaaggccatcatgcggaaccggcggcaggagatgcggcag
tatttcaacgtggggcaacaagcacagatccccatcgccactgctggtgttgtgtaccca
ggagccatcgccatggctggaatgccctcccctcacctgccctcagagcactcgagcgtg
tcgagcagccccgagcctgggatgcccgttattcagagcacttacggtgtgaaaggagag
gagccacatatcaaagaggagattcaggccgaggacatcaatggagagatttacgatgaa
tatgacgaggaagaggatgacccggatgtagattatgggagtgacagtgaaaaccatatt
gcaggacaagccaactga
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