Oryctolagus cuniculus (rabbit): 100354055
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Entry
100354055 CDS
T03373
Gene name
UPF2
Definition
(RefSeq) UPF2 regulator of nonsense transcripts homolog (yeast)
KO
K14327
regulator of nonsense transcripts 2
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03013
RNA transport
ocu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09122 Translation
03013 RNA transport
100354055 (UPF2)
03015 mRNA surveillance pathway
100354055 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
100354055 (UPF2)
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100354055 (UPF2)
mRNA cycle factors
P-body specific factors
100354055 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100354055
NCBI-ProteinID:
XP_002717550
Ensembl:
ENSOCUG00000006230
LinkDB
All DBs
Position
16
AA seq
1287 aa
AA seq
DB search
MPGPGLGAGGGEPAVAGLKIVLGHIMPAERKKPASMEEKESLLNNSEKDCSERRPVSSKE
KPKDDLKLTAKKEVSKVPEDKKKKLEEDKRKKEDKERKKKEEEKVKAEEEEKKKHEEEER
KKQEEQAKRQQEEEAAQLKEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSR
LDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAV
HLCSLFHQRYADFAPSLLQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEG
LSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEI
ISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFA
MSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDED
ARNFYENLIDLKAFVPAILFKDNEKSCQNKDSNKEDSKEAKESKDNKEVSSPDDLELELE
NLEINDDTLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDL
IDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSM
LRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMA
CTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKT
VKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNS
IHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRM
VESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLD
CFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDL
EREFLIKLGLVNDKDSKDSMTEGENLEDDDEEEEGGAETEEQSGNESEVNEPEEEEGSDN
DDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLE
NLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGEAESTDTMPFVMLTRKGNKQQF
KILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPAN
TNRERRPRYQHPKGAPNADLIFKTGGR
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggccgggcctcggcgctggaggcggggagcctgccgtggccgggttgaagatt
gtcctgggtcacataatgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaa
tctctactaaacaacagtgagaaagactgcagtgaaaggcggccagtgagcagcaaggag
aaaccaaaagacgatctcaagctcactgccaagaaggaggtcagtaaggtccctgaagac
aaaaagaagaagctggaagaagataagagaaaaaaggaagataaggaacgcaagaaaaaa
gaagaagaaaaggtaaaggcagaggaagaagaaaaaaagaaacatgaagaagaagagaga
aaaaagcaagaagagcaggcaaaacgacagcaagaagaagaagctgcccagttgaaagaa
aaagaagaatcccttcagcttcatcaggaagcttgggaacgacatcagttaagaaaggaa
cttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaacttctttagccgc
ctagactcaagtttgaagaaaaacactgcttttgtcaagaaactaaaaactattacagaa
caacagagagactccttgtcccatgattttaatggcctgaatttaagcaaatacattgca
gaagctgtagcttctattgtggaagcaaagttaaaaatctctgatgtgaactgtgctgtg
cacctttgctctctctttcaccagcgctatgctgactttgccccatctcttcttcaggtc
tggaaaaaacattttgaagcaaggaaagaggaaaaaactcctaacattaccaaattaaga
actgatttgcgtttcattgcggaattgacaatagttgggattttcacggacaaggagggt
ctttccttaatatatgaacagctaaaaaatattattaatgctgatcgggaatctcatact
catgtttccgtggtgattagtttctgtcgacattgtggagatgatattgctggactcgta
ccaaggaaagtaaagagtgctgcagaaaagtttaatttgagttttcctcctagtgagatc
attagtccagagaaacaacagcctttccagaatcttttaaaagagtactttacgtctttg
accaaacacctgaaaagggaccacagggagctccagaatactgagagacaaaacaggcgt
attcttcattctaaaggagagctaagtgaagacagacataaacagtatgaagaattcgct
atgtcttatcagaaactgctggcaaattcgcagtccttagcagatcttttggatgaaaat
atgccagatcttcctcaggacaaaccaacaccagaagagcatggacctggaattgatata
tttacacctggtaaacctggagaatatgacttggaaggtggtatatgggaagatgaagat
gctcggaatttttatgagaatctcattgatttgaaagcttttgttccagctatcttgttt
aaagacaatgaaaaaagttgtcaaaataaagattccaacaaagaggattccaaagaggca
aaagaatctaaggataataaggaggtctcaagtcctgatgatttggaacttgagttggag
aatctagaaattaatgatgacactttagaattagaaggtggagatgaagccgaggatctt
acaaagaaacttcttgatgaacaagaacaagaagatgaagaagccagcactgggtctcat
ctcaagctcatagtggatgctttcctgcagcaattgcccaattgtgtcaaccgagatttg
atagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaacaggaagaag
ttggtacgggcactcttcatagttcctagacaaaggttggatttgctaccattttatgca
agattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgttccatg
ctgaggggggatttcagatttcatgtacgtaaaaaggaccagatcaatattgaaaccaag
aacaaaactgttcgttttattggagagttaaccaagtttaagatgttcacgaaaaatgac
acactacattgtttaaagatgcttctgtcagatttttctcatcaccatattgaaatggca
tgcacccttctggaaacatgtgggcgatttctgttcagatctccagaatcacacctgagg
accagtgtacttttggagcaaatgatgagaaagaaacaagccatgcatcttgatgcaaga
tacgtcacaatggtggagaatgcatactactactgcaacccacctccagctgaaaagacg
gtgaaaaagaaacgccctcctctccaggaatatgttcggaaacttttgtacaaagatctc
tctaaggttaccaccgagaaggttttgagacagatgcgaaaattgccctggcaggaccaa
gaagtgaaagattatgtcatctgttgtatgataaacatttggaatgtgaaatataacagt
attcactgtgtagccaacctcttggcaggactggtgctctaccaagaggatgttgggatc
cacgttgtggatggagtcttagaagatatccgattaggaatggaggttaatcagcctaaa
tttaatcagcggcgtatcagcagcgccaagttcttaggggaactttataattaccgaatg
gtggaatcagccgttattttcaggactctctattcttttacttcatttggtgttaaccct
gatggttctccaagttcgctggaccctcctgagcatcttttcagaattcgactcgtctgt
actattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaacttgat
tgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtttggaca
aaagaccatccatttcctattgatatagattatatgatcagtgatacactagaactccta
agaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacatgacttg
gaacgagaattcttaataaaactaggcctagtaaatgacaaggattccaaagattctatg
acagaaggagaaaatcttgaagatgatgatgaagaagaagaaggaggtgccgaaacagaa
gaacagtctggaaatgaaagtgaagtaaatgagccagaagaagaggaaggttctgataat
gatgatgatgagggagaagaagaggaagaagagaatacagattaccttacagattccaat
aaggagaatgaaactgatgaagagaatactgaggtaatgattaaaggaggtggactgaag
cacgtgccttgtgtagaagatgaggactttattcaagctctggataaaatgatgctagaa
aatcttcagcaacgaagtggagaatctgttaaagtgcaccaacttgatgttgcaattcct
ttgcatctcaaaagccagctgaagaaaggtcccccacttggtggtggggaaggagaggca
gagtccacagacaccatgccatttgtcatgttaacaagaaaaggcaataaacagcagttt
aagattcttaatgtgcccatgtcttctcaacttgctgcaaatcattggaaccagcaacag
gcagaacaagaagagaggatgagaatgaaaaagcttacactagatatcaatgaacggcaa
gaacaagaagattatcaagaaatgttgcagtctcttgcacagcgcccagctccagcaaac
accaatcgtgagcggcggcctcgttaccaacatccaaagggagcacctaatgcagatcta
atctttaagactggtgggaggtaa
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integrated database retrieval system
