KEGG   Oryctolagus cuniculus (rabbit): 100354982Help
Entry
100354982         CDS       T03373                                 

Gene name
HDAC6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu05034  Alcoholism
ocu05165  Human papillomavirus infection
ocu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09160 Human Diseases
  09161 Cancers
   05203 Viral carcinogenesis
    100354982 (HDAC6)
  09164 Substance dependence
   05034 Alcoholism
    100354982 (HDAC6)
  09167 Infectious diseases
   05165 Human papillomavirus infection
    100354982 (HDAC6)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatase and associated proteins [BR:ocu01009]
    100354982 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA Biogenesis [BR:ocu03019]
    100354982 (HDAC6)
   04131 Membrane trafficking [BR:ocu04131]
    100354982 (HDAC6)
   03036 Chromosome and associated proteins [BR:ocu03036]
    100354982 (HDAC6)
Enzymes [BR:ocu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100354982 (HDAC6)
Protein phosphatases and associated proteins [BR:ocu01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100354982 (HDAC6)
Messenger RNA biogenesis [BR:ocu03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     100354982 (HDAC6)
Membrane trafficking [BR:ocu04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    100354982 (HDAC6)
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     100354982 (HDAC6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP
Motif
Other DBs
NCBI-GeneID: 100354982
NCBI-ProteinID: XP_008270807
Ensembl: ENSOCUG00000010141
LinkDB All DBs
Position
X
AA seq 1257 aa AA seqDB search
METKSSGTRGPTGRREVGGGRRGRSLSSGPRLESGSGRIGRHRQQGRENRTRAEISPTMS
STGPESTTARSRRSRHNPQSSPHDSSGTPKRSVKKGALPRCSPNLLEIKKKGKMKKLSQA
AEEYLITGLQELDLDSEAKTPAGTGLVFDDQLNEFHCLWDDSFPEGPERLHAIKEQLIQE
GLLDRCVSFHARFAEKEELMLVHSLEYIDLMESTQYMKEGELRVLADTYDSVYLHPNSYS
CACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKH
GIQRVLIVDWDIHHGQGTQFMFDQDPSVLYFSIHRYEQGRFWPHLPASNWSTTGFGQGQG
YTINVPWNQVGMRDADYIAAFLHILLPVAFEFQPQLVLVAAGFDALQGDPKGEMAATPAG
FAQLTHLLMGLAGGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPMLESPGIPCQSAQN
SLSCTLGALEPFWEFLVRSVETIEEDSMEEDSMEESEESGFWEPPVLPMLTWPVLQARTG
LVYDQRMMSHCNLWDNHHPETPQRILRIMCHLEELGLAGRCLNLPARPATDAELLTCHSA
EYVERIRATQKMKTRELHREGANFDSIYICPSTFTCAQLATGTVCRLVEAVLEGEVLNGV
ALVRPPGHHAEQDAACGFCFFNSVAVAARHAQAISGRALRVLIVDWDIHHGNGTQHIFED
DPSVLYISLHRYDQGTFFPVGDEGACSQMGRAAGTGFTVNVAWNGSRIGDADYLMAWHRL
VLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLAGGRIILILEGGY
NLTSISESMAACTRSLLGDPPPMLALLRPPQSGALASITETIQVHRKYWRSLWVMKVEDK
EGLFSFKSATKKPPRPANRGPAEGMTTPEKNVLEAGTGKATSALSAGESIPGHTESETAV
MLPEAHSSQAATRLATLYHTTSEVGMGGAMMDQTTWEAATGVATPDQTTSEESVGGTSLD
QTTSEVSMGEAMLDSIISEEGDTLNQNTSEEAVRAAKLIQTPLASSIDNQTPPTSPVPGA
ISQISPSQLTRSLRTLKLSDEAQKTSESQIPEEEGLLAEAAGGRDVDDVTLMQGPGNLAD
TDQAMFYAVTPMSWCPHLVAVSPKPATGLNVTQPCQDCGTLEENWVCLSCYEVYCSRFVN
AHMIQHHEASGHPLVLSYVDLSAWCYLCQAYVHHQALLDVKNTVHQNKFGEDMPHPH
NT seq 3774 nt NT seq  +upstreamnt  +downstreamnt
atggaaacgaaaagttccggcacccgcggccccacaggtcgtcgagaagttggcggcggc
cgcagagggcggagtttgagtagtgggccgcgcctagagagcggctctggaagaattggc
cggcatcgacagcaagggcgggaaaaccgcaccagggccgaaatctcccccaccatgtcc
tccactggcccggagtccaccacagccaggtcccgaaggagtaggcacaacccccagtcg
tcccctcacgactccagcggcaccccgaaacgaagtgttaagaagggcgctttacctcgc
tgcagtcccaacctgctagagataaagaagaaaggcaaaatgaagaagctcagccaagca
gctgaagaatacctaatcacggggctgcaagagctggatctggactctgaggccaagacg
ccggctggcactggtttggtgttcgatgatcagctcaatgaattccactgcctctgggat
gacagtttcccagaaggtcctgagcggctccatgccatcaaggagcaactgatacaggag
ggcctcctggatcgctgtgtatcctttcacgcgcggtttgcagaaaaggaggagctgatg
ttggttcacagcctagaatacattgatctgatggagtcgactcagtacatgaaagaaggg
gaactccgtgtcctagcagacacctatgactcagtatatctgcatccgaactcatactcc
tgtgcctgcctggcttcaggttctgtcctcaggctggtggatgcagtcctgggggctgag
atccggaatggcatggccatcatcaggcctcctggacaccacgcccagcacagtcttatg
gatgggtattgcatgttcaatcacgtggctgtggctgctcgttatgctcaacagaagcat
ggcatacagagggtccttattgttgactgggatatacaccacggtcaaggaacacagttc
atgtttgaccaggaccccagtgttttatatttctccatccaccgctatgagcaaggtcga
ttctggccccatcttccagcctctaactggtccaccacaggtttcggccaaggtcaagga
tataccatcaatgtgccttggaaccaggtggggatgcgggatgctgactacattgctgcg
ttcctgcacatcctgctgccagtcgcctttgagttccaacctcagctggtccttgtggct
gctggatttgatgctctccaaggggaccccaagggcgagatggctgccactccagctggg
ttcgcccagctaacccacctgctcatgggtctggcaggaggcaagctgatcctgtctctg
gagggtggctacaacctccgttccctggcggagggcgtcagtgcctcgctccataccctt
ctgggagacccttgccccatgctggagtcccctggtatcccctgccaaagtgcccagaat
tcactctcctgtactttgggagcccttgagcccttctgggaattccttgtgcgatcagtt
gagaccatcgaggaagacagcatggaggaggacagcatggaggagagtgaggagtccgga
ttctgggagcccccggtgctgcctatgctgacatggccggtgctgcaggctcgcacaggg
ctggtctatgaccagcggatgatgagtcactgcaacttatgggacaaccaccatcccgag
acaccccagcgtatcttgcgtatcatgtgccatctggaggagttgggccttgctggacgc
tgcctcaacctaccagcacgacctgccactgatgctgagctgctcacttgccacagtgct
gagtatgtggagcgtatccgggccacgcagaagatgaagacccgggaactacatcgcgag
ggtgccaactttgactcaatctacatctgccccagcaccttcacctgtgcacagcttgcc
actggcaccgtctgccgcctggtggaggctgtgctggaaggagaggttttgaatggcgtt
gccctggtacgccccccaggacaccatgctgagcaggatgccgcttgtggtttctgcttt
ttcaactctgtggcagtggctgctcgccatgcccaggccatcagtggacgtgccctgcgg
gtcctgattgtggattgggacatccatcatggtaatgggactcagcacatttttgaggat
gaccccagtgtgctctacatatccctgcaccgctatgatcagggcaccttcttccccgtg
ggggatgagggtgcctgcagccagatgggccgggctgcgggcacaggtttcactgtcaac
gtggcctggaatgggtcccgcataggggatgctgactacctgatggcctggcatcgtctg
gtgcttcccattgcatacgagtttaacccagaactggtactggtctcagcgggctttgat
gctgcacgaggagacccactggggggctgccaggtgtcacctgagggttatgcccacctc
acccacctgttgatgggccttgctggtggccgcattatccttatcctagagggtggctat
aacctaacatccatctcggagtctatggctgcctgcacccgctcccttcttggagaccca
ccacccatgctggccctgctgcgacccccacaatcaggggccctggcctcaatcactgag
accatccaggtccatcgcaaatactggcgcagcctgtgggtcatgaaggtagaagacaag
gagggactgttcagttttaagtcagctaccaagaagccacctcgaccagctaatcgtggg
ccagctgaggggatgaccacaccagaaaagaatgttctggaagcaggcacggggaaggcc
acctcagccctatctgcaggagagtccattccaggccatactgaatcagagacagctgtg
atgctccctgaggcccattcctcacaggcagccacaaggttagccaccctgtaccacacc
acctcagaggtgggcatgggaggagccatgatggaccagaccacctgggaagcagccaca
ggggtagccacaccagaccagaccacctcagaggagtctgtgggcggaacctcactggac
cagaccacctcagaggtttccatgggggaagccatgctggacagtatcatttcagaggaa
ggagacacgctgaaccagaacacctcagaggaggctgtgagggcagccaagctgatccaa
actcctctagcctcaagcatagataaccagacgcccccaacctcacctgtgccaggagcc
atatcccagatatcccctagtcagctgactaggagtctcagaaccttgaaactaagcgat
gaagctcagaagacctcagaatctcagattccagaagaggagggcctactagcagaggca
gctggaggtcgggatgtggatgatgtgacactgatgcagggaccagggaaccttgctgac
actgaccaggccatgttttatgctgtgacaccaatgtcctggtgtcctcatttggtggca
gtaagccccaaacctgcaacaggcctgaatgtgactcaaccttgtcaagactgtggaaca
ctcgaggaaaattgggtgtgtctgtcttgctatgaggtctactgcagccgttttgtcaat
gcccatatgatccaacaccatgaagcctctggacacccactggtcctcagctacgttgac
ctgtctgcctggtgttacctctgccaggcctatgtccaccaccaggctctcctagatgtg
aagaacacggtgcaccagaacaagtttggggaggacatgccccacccacactaa

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