Oceanobacillus iheyensis: OB1408
Help
Entry
OB1408 CDS
T00093
Name
(GenBank) hypothetical conserved protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OB1408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oih03019
]
OB1408
Messenger RNA biogenesis [BR:
oih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OB1408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
DUF4453
Motif
Other DBs
NCBI-ProteinID:
BAC13364
JAMSTEC:
OB1408
UniProt:
Q8ER98
LinkDB
All DBs
Position
complement(1450721..1452388)
Genome browser
AA seq
555 aa
AA seq
DB search
MKFVKNDQAAVFALGGLGEIGKNTYAIQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VQNEDKIKGLIITHGHEDHIGGIPFLLREINVPIYAGPLAIGLIRNKLEEHGLLRNAKLI
TIQEDDIIKFRKTSVSFFRTTHSIPDSYGVVVKTPPGNIVHTGDFKFDFTPVGEPANLAK
MAEIGSEGVLCLLSDSTNSEVPGFTMSERVVGESIHDIFSRVDGRLIFATFASNIYRLQQ
VVEAAVKYNRKVAVFGRSMESAINIGLELGYIQAPKDTFIEGNQINRLPANEVTILCTGS
QGETMAALSRIANGTHRQIQLIPGDTVVFSSSPIPGNTVSVSRTINKLYRAGADVVHGKL
SNIHTSGHGSQEEQKLMLRLIRPKFFMPIHGEYRMLKEHVKLGELCDVEAENSFVMDNGD
VLALSKDHAAIAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMSDFKI
ASGPDIISRGFVYMRESEDLINQAQKLVSNHLEKVMERKTTQWSEIKNEITDTIAPFLYE
KTKRRPMVLPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtcaaaaatgatcaagctgctgttttcgctctaggtggactaggtgaaatc
ggcaaaaatacgtatgccatccaatttcaagatgaaattattttaattgatgctgggatt
aaatttcctgaagatgaacttttaggaattgattatgttatccctgattatacgtattta
gtacaaaacgaagataaaataaaagggttaattattacccatggtcatgaagaccacatt
ggtggtattccatttttactgcgtgaaattaatgtgccaatttacgcaggtccattagca
attggactaattcgcaataaattagaagagcatggcttactaagaaatgcaaaactaatt
accattcaagaagatgatattattaaattccgaaaaacatccgttagcttcttccgtacg
acacatagtatccctgattcttatggcgtcgtagtaaaaacaccacctggtaacattgtt
catactggtgatttcaaatttgatttcacacctgttggtgaacccgctaaccttgcaaaa
atggctgagattggttcagaaggtgtattatgccttctgtcagatagtactaatagtgaa
gtacctgggtttacaatgtccgagcgtgtcgttggagaaagtattcacgatatattcagc
agagtcgatggtagattgatcttcgcaacatttgcttccaacatctatcgtttacaacaa
gttgttgaagcagctgttaagtacaatcgtaaagtagctgtatttggtagaagtatggaa
tctgctataaatattggcctggaattaggttatatccaagcgccgaaagatacatttatt
gaaggtaaccagattaatcgtcttcctgcaaatgaagtaacgatcctctgtactggttcc
caaggtgaaacaatggctgcactatctcgaattgcaaatggtacacatagacaaattcaa
ttaattcctggagacactgtagtattctcttcctctccaatcccggggaatactgtcagc
gtaagcagaaccattaataaactttatcgagcaggggcagatgttgttcatggtaagttg
agtaatattcatacctctggtcatggtagtcaagaagaacaaaaactaatgcttcgctta
attcgtccgaaatttttcatgccaatacatggagaatatcgtatgctaaaagaacatgtt
aaattaggagaattatgtgatgtagaagctgaaaattcttttgtaatggataatggtgat
gttctagcactaagcaaggatcatgcagctattgctgggaaaataccttctggatccgta
tacgttgacggtagtggaattggtgatataggaaatattgttctacgagatcgtcgcatc
ttatctgaagaaggattagttattgttgtagtgagcattaacatgagtgacttcaagata
gcttctgggccagatattatctctcgaggctttgtatatatgagagaatctgaagactta
ataaaccaagctcaaaaattagtgtctaatcacttagaaaaagtaatggagcgtaaaaca
acacaatggtcagagattaaaaatgaaatcactgatacaattgctccattcctatatgaa
aaaacaaaaagacgtccaatggtacttccaattatcatggagatttaa
DBGET
integrated database retrieval system