KEGG   Oryzias latipes (Japanese medaka): 101155264
Entry
101155264         CDS       T02443                                 
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
  KO
K20177  vacuolar protein sorting-associated protein 3
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:ola00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    101155264 (tgfbrap1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ola04131]
    101155264 (tgfbrap1)
Membrane trafficking [BR:ola04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    101155264 (tgfbrap1)
SSDB
Motif
Pfam: Vps39_2 Vps39_1 CNH Clathrin Prok-RING_1
Other DBs
NCBI-GeneID: 101155264
NCBI-ProteinID: XP_011488721
UniProt: A0A3B3H4X9
LinkDB
Position
3:complement(16411344..16421539)
AA seq 870 aa
MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLDEVASPMGKL
SYSAQKLLNKYLGLKKPVAELRAASALERLIVLCDGMVFLVDMVTLESVPSAAGGGVKIR
GVIAFCVNENPVNGDPFCVEMAILSSKRRTVQIYMVHKDRVQLVKEVSTPEQPCALSLDG
YFLCLALTTQYMILNYNTGASQDLFPYNSEERRPIVKRISREEFLLAAPGGLGMFANAEG
VSQRAPVSWSESVIAAAVSFPYVVALDENFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALMLMEGAQRNIPKDKFQVLHRRILQRAG
FIQFGKLQFQEAKDHFRKGELDVRELISLYPLLLPASSSFTRFHPPLHEFADLNHLAQGD
QEKVLQCKRFLISYLKEVRSTEVVNGCREDVDTALLKLYAEQDHDSLLDLLASENACVLA
DSVPCLEKYHKYFALGLLYHYNGQDSAALQVWTRVVNGDLQDSTRSDLFDYIVDFLCCCS
NLDLVWKYADWALQKDSTKGVHIFIRRPLSTDQSELNPDKVITYLGKNKQALLLYLEHLV
LEKKIQKEKFHTHLAVLYLERVLSLLSDSSADAEPLTKARERLQAFLRESNLYRVQFLLG
KIEDCEQLLLERATLHGKLEEHDKALHILVHKLRDFPSAEAFCVWASSGRDPAYRQRLFH
LLLEEYLGGEPRVGGGGELEMAAVDVLNRHGEVFDAVRVLRVLPESWSLQLLRPFLNRAI
RASMHARHTSQIAVGLAHSENVQLLHDRLKERKKPIFVSEKKGCHLCHNTFKEPDVVCLP
GGVPVHTHCVAQRIKDSPTKRHLTNSSNHT
NT seq 2613 nt   +upstreamnt  +downstreamnt
atgagtgtgaaggccttcgagctcgtcccggctgtggagcgagacctcctcatgggcgac
aaagcccgcatcaacatcgagtgtattgaatgttgtggcaagcacctgtacgtcggcacc
aacgactgcttcattcaccactttctcctcgacgaggtcgcctcgcccatggggaagctg
agctactcagctcagaagcttctgaacaaatacttgggcctgaagaaaccggtggctgag
ctgcgggctgcttctgctttggagcgcctgatcgtgctttgtgatgggatggtatttctt
gtagacatggtgactctggagagcgtgccctcagcggcaggaggcggagtgaagatcaga
ggagtgattgccttctgcgtaaacgagaacccggtgaacggggatccgttctgcgtggaa
atggccatactctcctcaaagaggcgaaccgtgcagatttacatggtgcacaaggacagg
gtgcagctggtcaaggaggtgtccactccggagcagccctgcgccctcagtctggatggt
tacttcttatgtctggccctcaccacacaatacatgattctgaactacaacacaggagcc
tctcaggacctgttcccctacaacagtgaggagaggaggcccatcgtgaagaggatcagc
agggaggagttcctcctggctgcacccgggggtctcggaatgtttgccaatgcagagggg
gtatctcagcgggctccggtcagctggtcagagagcgtgattgctgcggctgtgagtttt
ccctacgtggtggctctggatgagaatttcatcaccatccacagcatgctggaccaacag
ctaaagcagactctgtcgttcagggacggacacatactgcaagactttgaagggaaggtc
attctggcctccacaaaggcggtgtacgtcctggtgcctctgcctttggagagacagatc
caggatctgctggccagtcaccgggtggaggaggcgctcatgctcatggagggcgcacag
agaaacattcccaaagacaaatttcaggttttgcacagaagaatcctccagcgagcgggg
ttcatacagttcggcaagcttcagtttcaggaagccaaagaccattttaggaagggtgaa
ctggatgtgcgggagctgatctctctctacccgttgctgctacccgcttcttcctccttc
acccgctttcaccctcctctccacgagttcgccgacctcaaccatcttgcacagggcgac
caggagaaagttctacagtgcaagaggttcctcatcagttatctgaaagaggtacggagc
accgaggtggtgaatggctgtcgggaggatgtggacacagccctgttgaagctctacgct
gaacaggaccatgacagcctcttggacctcctagcttcagagaacgcatgcgtgcttgca
gacagtgttccgtgcctggagaaatatcacaaatattttgcgctcggactactttatcat
tataacggtcaagactccgcagcactacaggtgtggactcgtgtggttaatggagacttg
caggactccaccagatcagacctttttgactacattgtggacttcctgtgctgctgttcc
aatctggacctggtttggaagtatgcggactgggcactgcagaaagattccactaaaggt
gtccacatctttataaggagaccgttgagcacagatcagtcagaactaaaccctgacaaa
gtcattacctacctggggaagaacaagcaggcgctgcttctctacctggagcatctggtg
ctggagaagaagatacagaaggagaagttccacactcacctcgccgtgttgtacctggag
agggttttatcgttgctgtcagactcatcagcagatgcagaaccattgaccaaagcaaga
gagagactgcaagcgttcctcagggagtccaacttgtatcgtgtacagtttcttttagga
aaaattgaggactgtgaacaattgctgctagagcgtgcaacactacatggaaaactagag
gagcacgacaaagccctgcacattctggtgcacaagctcagagactttccctccgctgag
gccttttgcgtgtgggcctcttctggtcgcgatcctgcgtaccggcagcggctgtttcac
ctgctcctggaggagtatttaggaggagaacctcgagtcggaggaggcggcgagctggaa
atggcagcggtagacgtcttaaataggcacggcgaggtgtttgacgctgtcagggtgttg
cgggtgcttcctgaaagctggtcgctgcagctgctgcggccctttctaaaccgcgccatc
agagccagtatgcacgcccgccacacctctcaaatcgctgtgggcctagcacattcagaa
aacgttcagctgctgcacgaccggttgaaagagcgcaagaaaccgatctttgtctcagaa
aagaagggatgccacctctgccacaacacctttaaggagccagatgtggtgtgtctgcct
ggaggagtccccgttcacactcactgtgtcgctcagagaataaaagactctcccacaaag
agacacttgactaatagcagcaatcatacgtga

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