Oryzias latipes (Japanese medaka): 101155264
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Entry
101155264 CDS
T02443
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101155264 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101155264 (tgfbrap1)
Membrane trafficking [BR:
ola04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101155264 (tgfbrap1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
101155264
NCBI-ProteinID:
XP_011488721
UniProt:
A0A3B3H4X9
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Position
3:complement(16411344..16421539)
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AA seq
870 aa
AA seq
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MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLDEVASPMGKL
SYSAQKLLNKYLGLKKPVAELRAASALERLIVLCDGMVFLVDMVTLESVPSAAGGGVKIR
GVIAFCVNENPVNGDPFCVEMAILSSKRRTVQIYMVHKDRVQLVKEVSTPEQPCALSLDG
YFLCLALTTQYMILNYNTGASQDLFPYNSEERRPIVKRISREEFLLAAPGGLGMFANAEG
VSQRAPVSWSESVIAAAVSFPYVVALDENFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALMLMEGAQRNIPKDKFQVLHRRILQRAG
FIQFGKLQFQEAKDHFRKGELDVRELISLYPLLLPASSSFTRFHPPLHEFADLNHLAQGD
QEKVLQCKRFLISYLKEVRSTEVVNGCREDVDTALLKLYAEQDHDSLLDLLASENACVLA
DSVPCLEKYHKYFALGLLYHYNGQDSAALQVWTRVVNGDLQDSTRSDLFDYIVDFLCCCS
NLDLVWKYADWALQKDSTKGVHIFIRRPLSTDQSELNPDKVITYLGKNKQALLLYLEHLV
LEKKIQKEKFHTHLAVLYLERVLSLLSDSSADAEPLTKARERLQAFLRESNLYRVQFLLG
KIEDCEQLLLERATLHGKLEEHDKALHILVHKLRDFPSAEAFCVWASSGRDPAYRQRLFH
LLLEEYLGGEPRVGGGGELEMAAVDVLNRHGEVFDAVRVLRVLPESWSLQLLRPFLNRAI
RASMHARHTSQIAVGLAHSENVQLLHDRLKERKKPIFVSEKKGCHLCHNTFKEPDVVCLP
GGVPVHTHCVAQRIKDSPTKRHLTNSSNHT
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggccttcgagctcgtcccggctgtggagcgagacctcctcatgggcgac
aaagcccgcatcaacatcgagtgtattgaatgttgtggcaagcacctgtacgtcggcacc
aacgactgcttcattcaccactttctcctcgacgaggtcgcctcgcccatggggaagctg
agctactcagctcagaagcttctgaacaaatacttgggcctgaagaaaccggtggctgag
ctgcgggctgcttctgctttggagcgcctgatcgtgctttgtgatgggatggtatttctt
gtagacatggtgactctggagagcgtgccctcagcggcaggaggcggagtgaagatcaga
ggagtgattgccttctgcgtaaacgagaacccggtgaacggggatccgttctgcgtggaa
atggccatactctcctcaaagaggcgaaccgtgcagatttacatggtgcacaaggacagg
gtgcagctggtcaaggaggtgtccactccggagcagccctgcgccctcagtctggatggt
tacttcttatgtctggccctcaccacacaatacatgattctgaactacaacacaggagcc
tctcaggacctgttcccctacaacagtgaggagaggaggcccatcgtgaagaggatcagc
agggaggagttcctcctggctgcacccgggggtctcggaatgtttgccaatgcagagggg
gtatctcagcgggctccggtcagctggtcagagagcgtgattgctgcggctgtgagtttt
ccctacgtggtggctctggatgagaatttcatcaccatccacagcatgctggaccaacag
ctaaagcagactctgtcgttcagggacggacacatactgcaagactttgaagggaaggtc
attctggcctccacaaaggcggtgtacgtcctggtgcctctgcctttggagagacagatc
caggatctgctggccagtcaccgggtggaggaggcgctcatgctcatggagggcgcacag
agaaacattcccaaagacaaatttcaggttttgcacagaagaatcctccagcgagcgggg
ttcatacagttcggcaagcttcagtttcaggaagccaaagaccattttaggaagggtgaa
ctggatgtgcgggagctgatctctctctacccgttgctgctacccgcttcttcctccttc
acccgctttcaccctcctctccacgagttcgccgacctcaaccatcttgcacagggcgac
caggagaaagttctacagtgcaagaggttcctcatcagttatctgaaagaggtacggagc
accgaggtggtgaatggctgtcgggaggatgtggacacagccctgttgaagctctacgct
gaacaggaccatgacagcctcttggacctcctagcttcagagaacgcatgcgtgcttgca
gacagtgttccgtgcctggagaaatatcacaaatattttgcgctcggactactttatcat
tataacggtcaagactccgcagcactacaggtgtggactcgtgtggttaatggagacttg
caggactccaccagatcagacctttttgactacattgtggacttcctgtgctgctgttcc
aatctggacctggtttggaagtatgcggactgggcactgcagaaagattccactaaaggt
gtccacatctttataaggagaccgttgagcacagatcagtcagaactaaaccctgacaaa
gtcattacctacctggggaagaacaagcaggcgctgcttctctacctggagcatctggtg
ctggagaagaagatacagaaggagaagttccacactcacctcgccgtgttgtacctggag
agggttttatcgttgctgtcagactcatcagcagatgcagaaccattgaccaaagcaaga
gagagactgcaagcgttcctcagggagtccaacttgtatcgtgtacagtttcttttagga
aaaattgaggactgtgaacaattgctgctagagcgtgcaacactacatggaaaactagag
gagcacgacaaagccctgcacattctggtgcacaagctcagagactttccctccgctgag
gccttttgcgtgtgggcctcttctggtcgcgatcctgcgtaccggcagcggctgtttcac
ctgctcctggaggagtatttaggaggagaacctcgagtcggaggaggcggcgagctggaa
atggcagcggtagacgtcttaaataggcacggcgaggtgtttgacgctgtcagggtgttg
cgggtgcttcctgaaagctggtcgctgcagctgctgcggccctttctaaaccgcgccatc
agagccagtatgcacgcccgccacacctctcaaatcgctgtgggcctagcacattcagaa
aacgttcagctgctgcacgaccggttgaaagagcgcaagaaaccgatctttgtctcagaa
aagaagggatgccacctctgccacaacacctttaaggagccagatgtggtgtgtctgcct
ggaggagtccccgttcacactcactgtgtcgctcagagaataaaagactctcccacaaag
agacacttgactaatagcagcaatcatacgtga
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