KEGG   Oryzias latipes (Japanese medaka): 101160844
Entry
101160844         CDS       T02443                                 
Symbol
vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X2
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03250  Viral life cycle - HIV-1
ola04144  Endocytosis
ola04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    101160844 (vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    101160844 (vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    101160844 (vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ola04131]
    101160844 (vps4b)
   03400 DNA repair and recombination proteins [BR:ola03400]
    101160844 (vps4b)
Membrane trafficking [BR:ola04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    101160844 (vps4b)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    101160844 (vps4b)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_14 AAA_22 RuvB_N IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 AAA_17 RNA_helicase nSTAND3 AAA_24 PhoH Mg_chelatase AAA_7 Parvo_NS1 NACHT AAA_28 ResIII bpMoxR DUF5906 Sigma54_activat KAP_NTPase CLEC16A_C
Other DBs
NCBI-GeneID: 101160844
NCBI-ProteinID: XP_004079312
UniProt: H2MQM6
LinkDB
Position
17:complement(25487346..25499857)
AA seq 437 aa
MANNNLQKAIDLASKAAQEDKNQNYDEALRLYQAAVQYFLHVVKYEAQGDKAKQSIRAKC
AEYLDRAEKLKEYLKKKEKAPPAKPVKESQSDDKGNESDEGDDPEKKKFQNQLSGAIVME
KPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFSLAREHKPSIIFIDEIDSLCGSRSENE
SEAARRIKTEFLVQMQGVGNDNEGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEEHARA
FMFKLHLGSTPTTLTESDFATLGKKTNGYSGADISVIVRDALMQPVRKVQSATHFKRVRG
PSRDDPNVVVDDLLTPCSPGDPNAIEMTWMEVPGEKLLEPVVCMADMLRSLANTKPTVNE
QDLEKLKKFTEDFGQEG
NT seq 1314 nt   +upstreamnt  +downstreamnt
atggctaacaataatttacagaaagccattgatctagccagcaaggctgcacaggaagac
aaaaatcaaaactatgacgaggctctccgactttaccaagcagcggttcagtatttcctt
catgttgttaaatatgaagcccagggagacaaagccaaacaaagcattcgggcgaagtgt
gcagaatacttggacagggcagagaagttgaaggagtatctaaagaagaaggagaaagct
cctcccgccaagcctgtcaaagaatctcaatctgacgacaaagggaatgaaagtgatgaa
ggagatgatccagagaaaaagaagtttcaaaaccagctctcaggtgcaatcgtcatggag
aagccaaacataaaatggaacgatgttgctggtttagagggagccaaggaggcactgaaa
gaagctgttatacttccaattaaattcccccaccttttcacaggtaagagaactccatgg
agggggatcttgctgtttgggcctccaggtacaggaaagtcctacctggctaaagctgtc
gcaacagaggcaaacaactcgacctttttctcgatttcatcgtctgatctcgtttccaaa
tggctcggggagagtgaaaagttggtgaagaatcttttcagccttgcaagagagcataag
ccttcaattatcttcatagatgagatagattccctgtgtggttccagaagtgagaatgag
agcgaagctgctcgtcgtattaaaacagagttcctggttcagatgcagggtgtggggaat
gacaatgagggagtgctggttcttggggcaacaaacatcccttggactctagactcagcc
atcagaagaagatttgagaagaggatctacatccctctgcctgaagagcacgcccgcgcc
tttatgtttaagctccatctgggctccacccccaccacccttacagaatctgactttgcc
accctgggcaagaagacaaatggatactcgggagcagacatcagcgtcatcgtcagagat
gctctgatgcagcctgtgcgaaaggtccagtcagcaacccacttcaaacgggtgcggggg
ccatcaagagatgaccccaatgttgttgttgacgacttactgacgccttgttcacctggt
gatccaaatgctattgaaatgacctggatggaggttcctggggagaagttattggaacct
gttgtgtgcatggctgatatgttgaggtctctggccaacacaaagccaacagtcaacgaa
caagatctggagaaactgaaaaaattcacagaagactttggacaagagggctag

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