Oryzias latipes (Japanese medaka): 101165296
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Entry
101165296 CDS
T02443
Name
(RefSeq) rootletin isoform X4
KO
K16469
rootletin
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ola03037
]
101165296
Cilium and associated proteins [BR:
ola03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
101165296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rootletin
ADIP
DUF1515
Motif
Other DBs
NCBI-GeneID:
101165296
NCBI-ProteinID:
XP_011472208
LinkDB
All DBs
Position
4:complement(2851355..2880771)
Genome browser
AA seq
1809 aa
AA seq
DB search
MSCEEERRSPGLEAVIQKLEESLLHPEDISGERSLTVQVDEGEAGGTAIPIFTRIRQIIT
SNLAGGEEALAGASSEICEMEESRTVGEQPSSSQLDQLPIKCSGDKQRVHLESAERQKRL
EQDLNIEIQKRSSQLQEEQMRCASLSQVNSMLREQLDQAGALNRELAESLWTAQEELVLC
ETRLQREQKTAVSRSDREQAGIRAVWRLAASLRSEFTQFRTFTDRTLSGMLGECAAVSRH
LRAACTGLDARLAEEHVCSRVTALETQLREKLKEAMQLQAGWDAQKVQLNSRIQEMTDAV
KHLQSQSSEKDAGLSGTQAPGDGWKTRGAEEGLLTEIHNLHKILSHIHQLVSSHGDSSGS
KTASASPLCTLEAVQKTLSKHQAESQELHTRLEAAQVQVDTLRDQLLEEGVEQMISRVQS
GGQEVKDDSMSHCCALEPISNQENLEELLSGLRREVRSQSVELEAQRRSTLDLQRQRDLL
RQQREELETQLAQQRTEAQRGEKSLQELDRKHSDLRRELFLIKEAFSQITLQKELLENDK
AGLSEALTKMESQLAAKDCALAKLQNQEADLKDTVVKMAALSEGLAKDKVALSRIVMQTE
GEKGELDERRREAVAERTTARERAARAQKEMTNLLAEKQVLESSHGHLQDLCQKLEAEQD
LLLEEKAGALKMHSQVKRQMQALQEELGSCRKELEEKTAAVKRVTQDREEQAKDKAALEV
RLNSAERKACVLTQGLADLRAERESLEKALFESQELSASLEAEVTRLEGRRNSLILANEA
LTRDAAQRRGDAERELAEAAQQKSQLEEKLAQVARNALLVLSNKEQIHREQMETERMQRE
QQCSELAALQDQAEEQLHRQCEELRMSSQRELQQVQEELARTQKEFSQSLLQAESEKQQA
LSLMEAERAALTERMESLQKDVTRADLEIEHIRRDAVSKQEQDKSSITALQLQLQDLQTQ
LERSLDSHQQAHKSFTEQVKELNEEKEHAQQELRTLQLRLQEAEESLAKGHRDLTEAHRE
IGDSAQEQNNLRKEALDLRRHLNDETSMREAIRAANHQLRALIKKAERDKSSLKQALEQQ
EQKWIVLEECKNSVQQEAATLRSSMRELEKTHLQSCRELQELRRQVKMLEGENSRQTVEL
LKVQARVCHEEQKEEEARQEAFTLQQRLLECEAVKEAALNEVAGLQRCVRELETAEERSR
RLQQDLQQTEQRYKEAAAQLEASRTQIEELSVLLGLCENKAQGLEEQLVLSDAKYKEVEH
RLAELLSALRCTISVNHGSRSCSPSPWKRQLHVKGGESEAEGSFPSSSEEELSVKNVKNA
LQGLLQELRDAQREKDETKAQVVVLSQEVKELKDSHEVLTTQLLQLQRSVKQSEKGQEEM
AEQLVRAHTSLSLQQDLADRSEKDKRALEAELAQLKGRLEVLQGLESSANAEVRKHKESL
EAAESRASSLEVSQHTLEGEMQRAQLRAAELEAEAAALQERLTDTRRKLSESEDRCAALQ
VNEQRQAAVLARAEQQESQLREKTHKLSNSLNDLSRRSEGLQEQMTELQRALVSSEQDRR
LLQERLDKTWDALSESQRLKHALTEERQSLQKAQEDSELKISELENNNRVLKESLKQQQD
AELCTSHQLHNEKDQLKEKLRLLQTSMQKLQQEKAEMEPILTRLSKDKSVLRKTLEKVEM
DRLRKQEEAASAARDRAQLEQRVHSMEQQLAEKQDALQTLQSQVSHLEHSHAQRFLEVTA
YHHKELEEERARLKDSQLRAEFALDSREAAHQQRVRCLEEQVLALREQLDQESRRRQAYF
NQMLQPGRQ
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtgaagaggagcggcgctcgccgggcctggaggctgtgattcagaagctggag
gaatctcttcttcaccccgaggacatctcaggagaaagaagtctgacagtccaagtggat
gaaggagaggctggaggcacagcaatacccatcttcactcgcatccgccagatcatcacg
agcaacctggctggaggagaggaggccctggcaggtgccagctcagagatctgtgagatg
gaggagagcaggactgttggggagcagccgtcttccagccagctggaccagctgccaatc
aaatgcagtggtgacaaacagagggtccatttggaatcagctgagcgccagaagcgtctt
gaacaggatcttaacattgaaatccagaaaagatcttctcagctgcaggaggagcagatg
aggtgtgccagtctcagccaggtgaactcgatgctgcgggaacaactggaccaggcaggc
gccctcaacagagagctggctgagagtttgtggacggcccaggaagagctggttctgtgt
gagacacgcctgcagcgagaacagaagactgctgtctcccgttcggaccgcgagcaggct
ggtatcagagctgtgtggcgcctcgctgcctccctgcggagcgagttcacacagtttagg
actttcactgacagaactctgtccggaatgcttggcgagtgtgctgctgtgagccggcat
ctccgagctgcgtgtacgggtcttgacgcacggctcgctgaagaacatgtgtgtagtcgt
gtgacggcgctcgagacgcagctcagggaaaagctgaaggaggccatgcagctgcaggct
ggctgggatgcacagaaagtccagctgaactccagaatccaggaaatgactgacgccgta
aagcaccttcagagccagagcagtgagaaggatgcaggcctcagtggcacgcaggctcca
ggggatggatggaagacgaggggagcagaggaaggactgctcacagagatccacaacctt
cacaagattctgagccacattcaccagttggtaagcagtcatggggacagttctggttcc
aaaacggcatctgcctcccctctgtgcacgctggaggcagtgcagaagaccctctccaag
catcaggcagagtcacaggagctacacactcgtttggaagcagctcaggtgcaggtggac
acgttaagggatcagctgctagaagaaggtgtggagcagatgatctccagagtacagagc
ggaggtcaggaggtcaaagacgacagcatgagtcactgctgcgctctggagcccatttca
aatcaggagaacctggaggagctgctctctgggctgcggcgggaggtgcgctctcagagt
gttgagctggaggcacagcgccgctcgacactggacctccagagacagcgggacctcctc
aggcagcagagggaggagctggagacacagctggcacagcagcgcacagaagcccaaaga
ggggagaagagtctgcaggagctcgataggaagcactcagatctgcgcagggagcttttc
ctgatcaaagaggccttcagtcaaattactctccagaaagagctgctggagaacgacaag
gccggcctctctgaagctctcaccaagatggagtcccagcttgctgcaaaggactgtgct
ctggccaaactgcagaaccaagaggctgatctgaaagacactgttgtaaaaatggctgct
cttagtgaaggtctagctaaagacaaggtggccctcagccggattgtgatgcagacggag
ggggagaaaggagagctggatgaacgtagacgggaagctgtggcggagcgaaccacagcc
agagagcgtgcagcacgggcgcaaaaagagatgacaaacctccttgctgaaaagcaagtg
ttggaaagctctcacggtcacctgcaagatctctgccagaagctggaagcagagcaggat
ctcctgctggaggagaaagctggggccctgaagatgcactcccaggtcaaaaggcagatg
caggctctgcaagaggagctgggctcatgcaggaaggagcttgaggagaagaccgctgcc
gtaaagagagtcacccaagacagggaggaacaggccaaggacaaggctgccctggaagtc
aggctcaactctgcagagcgaaaggcctgtgttctcacacaggggctggctgatctgaga
gcagagagggagtccctggaaaaggctctgtttgagagccaggagctgtctgcctccctg
gaggctgaggtcaccaggctggagggcaggaggaacagcctgatccttgctaacgaggcc
ttgacgcgtgatgcagctcagaggcgtggagatgctgagcgagagcttgcagaagcggca
caacaaaaaagtcaactggaggagaaactggctcaagtggcaagaaatgcgctgttggtg
ctgagcaacaaggagcagattcaccgagagcagatggaaaccgaacgcatgcaaagggag
cagcaatgttcagagttggcggctctgcaggatcaggctgaggagcagctgcatcgacag
tgtgaggagctgcgcatgagcagccagagggagctgcagcaggtgcaagaagagctggcc
cggacacagaaagagttcagccaaagtcttctgcaggctgagagtgagaagcagcaggct
ctgtctctgatggaggcggaaagagctgccctcacagagagaatggaatcccttcaaaag
gatgtcaccagagccgacctggagatcgaacacattcgaagagatgcagtcagcaaacag
gaacaagacaagagctctataactgctcttcagcttcagctgcaggacctgcagactcag
ctggagaggtctctggactcccaccagcaagcccacaaaagtttcacagagcaggtcaaa
gagctgaatgaggagaaagagcacgcccaacaagagttacggacccttcaacttcgcctg
caggaggcagaagaaagtctggctaaagggcatagagatctgactgaggctcacagggag
atcggggattctgctcaggagcaaaacaatttaagaaaggaggctctggacctgagacga
cacctgaacgatgaaaccagcatgagagaagccatccgagccgccaaccaccagctccga
gctctcatcaagaaagcagagcgtgacaagagcagtctgaaacaggctctggaacagcag
gaacagaaatggattgttctggaggaatgtaagaactcagtgcaacaggaggctgccact
ctcagaagcagcatgagagagctggagaagacccacctgcagtcatgcagagagctgcag
gagctgcgcagacaggtaaagatgcttgaaggcgagaacagccgtcagacggtggagctg
ctaaaggtacaggcccgggtttgtcatgaggagcagaaggaggaggaggcccgtcaggag
gcattcacgctgcagcagagattactggagtgtgaggctgtcaaggaagcagcactaaat
gaggttgcaggtttgcagcgctgcgtgagggagctggaaacagccgaggagaggagccga
cgcctgcagcaggatctgcagcagactgagcaaaggtacaaggaagctgctgctcagctg
gaggcctccaggacccaaatcgaggaactctctgtgctgcttggcctctgtgaaaacaag
gcccagggcctggaggagcagctggttttaagtgatgccaaatacaaggaggtagagcat
cgactggcagagctactttcagctctgcgttgcacgatcagtgtcaaccatggatcccga
tcatgctcgccatctccctggaaaagacaactgcatgtgaaaggtggagaaagtgaggct
gagggatcgtttccttcatcttctgaggaagagctgagtgtaaagaatgtcaaaaatgcg
ctgcaagggttactgcaggaactcagggatgcacagagagaaaaggatgaaaccaaagct
caggtagtcgttctgagtcaagaagtgaaggaactgaaagactcccacgaggtgttgacc
acccagctgctgcagctgcagaggtccgtgaagcagtcagagaaaggtcaagaagaaatg
gctgaacaactggtgcgggcacacacttccctgtccctgcagcaggacctagcggatcga
tccgagaaggacaagagagccctggaagcagagctggctcaactcaaaggcaggttggaa
gtcttgcaggggttagaatcgtctgcaaatgcagaagtaaggaaacacaaggagtctctg
gaggcagcagagagcagagccagctctttggaggtctcccagcacaccctggaaggtgag
atgcagagggctcagctgagagcagcagagctggaggctgaggctgctgcgctgcaggag
cggctcacagacaccaggaggaaactgagcgagagcgaagatcgctgtgccgcgctgcag
gtcaatgagcagaggcaggccgccgtactggcccgagctgagcagcaagagagccagctg
agagaaaagacccacaagctttcaaacagcctcaacgacctgagccgccgctctgaagga
ctgcaggagcagatgacagagctgcagcgggccctcgtgtccagcgaacaggacagacgg
ctgctgcaggaacgactggataagacatgggatgcactttcagagagtcaaaggctgaaa
catgcactcacagaggagaggcagagccttcaaaaagcacaggaagactctgagctgaaa
atatctgagctggaaaacaacaacagggtcctaaaggagagcctgaagcagcagcaggat
gctgagctttgcacatcccaccagctccacaatgagaaagaccaacttaaagagaaactc
aggctcctgcagacctcgatgcaaaagcttcaacaggagaaagcagagatggaacctatc
ctgactcgcctcagtaaagacaagtctgtcttgagaaagacactagagaaggtggagatg
gacaggctgaggaagcaggaggaggcagcctctgctgccagagacagagcccagctggag
cagagagtccacagcatggagcagcagctggctgagaagcaggacgccctgcagaccctg
cagtcccaagtgtcccacttggagcactcccatgcccagcgcttcctggaggtgacagcc
tatcatcacaaggagctggaagaggagcgggcccgcctgaaggacagtcagctccgagca
gagtttgccctggacagcagggaggcggctcatcagcagagggtcagatgcctggaggag
caggtgctggctctcagagagcagctggatcaggagtccagaagacgacaggcttacttt
aaccagatgctgcagccgggcagacagtga
DBGET
integrated database retrieval system
