KEGG   Oryzias latipes (Japanese medaka): 101166453Help
Entry
101166453         CDS       T02443                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    101166453 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ola03400]
    101166453 (lig4)
Enzymes [BR:ola01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101166453 (lig4)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     101166453 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C DNA_ligase_IV BRCT RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 101166453
NCBI-ProteinID: XP_004066615
UniProt: H2LGF6
LinkDB All DBs
Position
2
AA seq 912 aa AA seqDB search
MDDAPSKSDAASEQTVAAQVPFSHLCTTLEKIQKAKLRPEKSKILGDFIGSWRNFHAALH
KNNPRTADSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRA
PTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVALNNASKKKDLMRKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQAFHPDAAELYNVNTDLNKVCQQLHNPSVS
LSDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGGSPLEGSLTPYIHNVFKSHVANCILDGEMMAYNPTTETFMQKGSRFDIKKL
MDDSELQTCFCVFDVLLVNDQKLGKEALRKRHEILQTVFTPAKGRMHLVPKSEARSVQEV
VSALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDSLMDELDLLIVGGYWGKG
RRGGMMSHFLCAVAEAPKPGEKPSVFHSLCRIGSGYTMKELYDLGLKLAKHWKVYRRSDP
PPSLLCSTEKPEVYIEPCNSIIVQVKAAEIIPSDMYRTNCTLRFPRIEKIRDDKEWHQCM
TLAELDQLRSKASGKLASRHLRIDDGDDQPQKKKKRKLPTKAKKAVSILDHFKPQDLSAV
SKETDMFEDVEFCILNGTEDHPKCELEKGVASCGGIVVQNPGRETYCVIAGAENMRVKNL
ISSDQHDVVWASWLLECLERKEVAPWQPRHMIHMSPTTREHFAKEYDPHGDSYFLDTDGQ
QLREVFGRIGDAEVEISVAQVEERYGFSDLPTSMFRPFTAYADVFARVGEPDTLIPATCL
EIRALEFRFHGGRVVERLEEGVSHVLVEEESRLLELRTLRRCFRRKFKIVKHTWVTDSIK
NGVLLDDREYLV
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggacgacgcgccttccaaaagcgatgcagccagcgagcagacggtggcggcgcaggtt
cccttcagtcacctgtgcacgaccttagagaagatccaaaaggccaaactgcgtccagag
aaatccaagatccttggggatttcatcgggtcatggcgaaacttccacgccgccttgcac
aaaaacaacccccgaaccgcggactccttctatccggccatgcgcctcatcgtcccgccg
tttgaacgcgagcgaatggcgtacggcatcaaggagagcatgctggcgaagctgtacatt
gacgtgttgggcctgccgaagaacgggccggaggccaacaagctgctgaactaccgcgct
ccgaccacgtcccagggtgaagccggagacttcgccggcatggcgtacttcgtgctgaag
aaacgatgcaccagccagggaaacctcagcatcaaagaggtcaacgacttcctggactcg
gtggcgctgaacaacgccagcaagaagaaggatctcatgaggaagagtctgctccacctc
atcacccagagctccgccctggagcagaagtggctcatccggatgatcctgaaggacatg
aagctcggcatcagcaaggagaccgtgctccaggccttccacccggacgccgcggagctt
tacaacgtcaacacagacttgaacaaggtgtgccagcagctccacaacccttcggtgtct
ttgagcgacgtctccatcggactcttctccgctttcaagccgatgctagccgcggtggct
aacattcgcaacgtggagaaacagatgggcaacagccccttttacatcgagacgaagctc
gacggcgagcgcatccagctccacaaggatggggacgtctacaagtacttcagccgaaac
gcctttgagtacacgcagcagttcggaggctcgccgctggaaggttccctgacgccgtac
atccacaacgtcttcaaaagccacgtggcgaactgcatcctggacggcgagatgatggcg
tacaaccccaccacggagaccttcatgcagaaggggagccggttcgacatcaagaagctg
atggacgactcggagctgcagacgtgcttctgcgtgttcgacgtgctgctggtcaacgac
cagaagctcggcaaagaggcgctgaggaagcgccacgagatcctccagacggttttcacg
cccgccaaggggcggatgcatctggttccgaagagcgaagccagaagcgtgcaggaggtg
gtgagcgcgctcaatgacgccatcgacagccgggaggaggggatcatggtgaaggacccg
ctgtccatctacaaaccggacaagcgcggggaaggctggctgaagataaagcccgagtac
gtggacagcctgatggacgagctggacctgctgatcgtcggaggttactgggggaaaggg
cggcgggggggtatgatgtcacacttcttgtgcgccgtcgccgaagctccaaagccgggc
gagaagccgtcggtcttccactccctgtgccgcatcggatcgggttacaccatgaaagaa
ctgtacgacctgggcctcaagctggccaaacactggaaggtgtacaggaggagcgacccg
ccaccgtccctcctgtgcagcaccgagaaacccgaagtctacatcgagccctgcaactcc
atcatcgtccaggtgaaggcggcggagatcatcccgagcgacatgtacaggaccaactgc
acgctgcgcttccccaggatcgagaagatccgagacgacaaggagtggcaccagtgcatg
accctggccgagctggaccagctccgcagtaaggcgtccgggaagctggcctcgcgccac
ctccgcatcgacgacggcgacgaccagccgcagaagaagaagaagcgcaagctgccgacc
aaagccaagaaagcggtcagcatcctcgaccacttcaagccccaagatctgtccgccgtc
tccaaggagacggatatgttcgaggacgtggagttctgcatcctcaacggcacggaggac
cacccaaaatgcgagctggagaaaggcgttgccagctgtggcgggattgtggtccaaaac
cccgggcgggagacctactgcgtgatcgccggcgcggagaacatgcgcgtgaagaacctg
atctcctcggaccagcacgacgtggtgtgggcctcctggctgctggagtgtctggagcgg
aaggaggtggcgccgtggcagcctcgccacatgatccacatgtcccccaccaccagggag
cacttcgccaaggagtacgacccccacggcgacagctacttcctggacacagacgggcag
cagctgcgggaggttttcgggcgcatcggcgacgcggaggtggagatcagtgtggcccag
gtggaggagcgctacggcttcagcgaccttccgaccagcatgttcagacccttcacggcg
tacgccgacgtgtttgcccgcgtcggagagccggacacgctcatacctgccacctgcctg
gagatcagggcgctggagttccgtttccacggagggcgcgtggtggagaggctggaggaa
ggagtttcccacgttctggtggaagaggagagccgacttctggagctgaggactctgagg
cgctgcttcaggaggaagttcaagatcgtcaaacacacgtgggtcaccgactccatcaaa
aacggcgtcctgctggacgacagagagtacttagtttga

DBGET integrated database retrieval system