Oryzias latipes (Japanese medaka): 101170218
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Entry
101170218 CDS
T02443
Gene name
cop1
Definition
(RefSeq) E3 ubiquitin-protein ligase RFWD2
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04115
p53 signaling pathway
ola04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101170218 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
101170218 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101170218 (cop1)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101170218 (cop1)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101170218 (cop1)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
101170218 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
WD40_like
zf-RING_10
zf-rbx1
zf_C2H2_10
Prok-RING_4
DZR
UvrD-helicase
zf-RING_4
FemAB
Motif
Other DBs
NCBI-GeneID:
101170218
NCBI-ProteinID:
XP_011484888
UniProt:
H2MCQ3
LinkDB
All DBs
Position
17
AA seq
705 aa
AA seq
DB search
MSSSRTQQQGGGGGASSVPSTSNSSSGNASNAVTSNGNNSGNVVPSRTLPAAGEGGSSVP
SLATVPSSRGGFASLNRPSASSGNRRKSLHQAPLYNGLLNSYEDKSNDFVCPICFEMIEE
AHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIVDNVDQLFPNFLVNELILKHKQRSEEKRL
KLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILMEFLK
EARKNKKEQLDQLQKELNFLEEDIKRVEEMSGLHSPVMEAECTVPNVETPSPGPSCSSII
EPADYTQPPGFGGSTQGKRQTWYNSTLASRRKRLTAHFDDLEQCYFSSKMSRITDEGRTL
NQLDDFMECLSKFTRYNTVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIK
VFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRS
KVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPT
SRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWN
VNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSV
LDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcagtcggacgcaacaacaaggcggcggtggtggcgcgagttcagtacccagc
accagcaatagcagcagcggcaatgcgagcaacgccgtaacaagcaatgggaacaattct
ggaaatgttgtgccctcccggactctgcccgcagccggagaggggggctcgtctgtgccc
tctctggccactgtaccgtcgtcccggggcggctttgcttccctcaacagaccctctgcg
tcctcaggcaacagaaggaaatcccttcaccaggcacccttatacaacggcctcttgaat
tcttatgaagataaaagcaacgattttgtctgtcccatttgcttcgaaatgatagaggag
gcgcacatgaccaagtgtggacacagtttctgttacaagtgtatccgccagagcttggaa
gacagcaacagatgtcccaagtgtaactatattgttgataatgtggatcagctgttccca
aactttttagtaaacgagctgatccttaaacacaagcaaagatcagaggagaagaggcta
aaattagaccatcctaacggttctcggtggcaggtcttccaggatgttttgagtcctgat
caggaaaacctggatctggcaaatgtcaatctgatgttggagcttttggttcagaagaaa
aagcagctggaagctgaatcacaagcagcccaacgacagatcctcatggagttccttaaa
gaagctcggaaaaataaaaaagagcaattagaccaacttcagaaagagctcaacttcctt
gaagaggacattaagcgtgtcgaggaaatgagcggacttcactccccagtgatggaagca
gagtgtacggtgccaaacgtcgagacgccctctccaggtccaagttgtagtagcatcatt
gagcctgcagattacacgcagcctccaggatttggtggaagcacccagggaaaacgacag
acgtggtacaacagcacgttagcgtcgaggaggaagagactgacggctcattttgatgat
cttgagcaatgctacttctcaagcaaaatgtcacgcatcacagatgagggtaggacctta
aaccaactggatgacttcatggagtgtttgtccaaattcacacgctacaacactgtgcgg
ccactggccacactgtcctatgccagcgacctctataatggctccagcattgtctccagt
atcgagtttgaccgtgactgtgactactttgccattgctggtgtgaccaagaagatcaag
gtgtttgagtacggcaccgtgatccaggatgccgtggacatccactatcctgtgaacgaa
atgacctgcaattccaaaatcagctgcatcagctggagtagttatcataagaaccttctg
gctagcagcgattatgagggaaccgtcattctgtgggatggattcaccggccagcggtcc
aaagtctaccaggaacatgaaaaaaggtgttggagtgtcgactttaatctgatggacccc
aaacttttagcttccggctctgatgatgctaaagtaaagctgtggtcaaccaatctggac
aactcagtagcgagcatcgaggctaaagctaacgtatgctgcgttaaatttagcccaaca
tccaggtatcatctggcattcggctgtgcagaccactgtgtccactactacgatctccgc
aacactaagcagccaatcatggttttcaaaggccacaggaaggccgtgtcctacgctaag
tttgtaaatggggaagaaatcgtttctgcttcgacggacagccagctgaagctttggaac
gtcaacaaacctcactgcctgcgctcctttaagggtcacatcaacgagaagaactttgtt
ggactggcgtcaaatggagactatgttgcctgtggaagtgagaacaactccctgtacctg
tattacaaaggactttccaaaacactgttaacattcaagttcgacacggtgaagagtgtt
ttggacaaagacaagaaagaagatgacaccaatgagtttgtgagtgccgtctgctggaga
gccctgcctgatggagagtcaaatgttctcattgctgcgaacagtcaaggaactatcaag
gttcttgaacttgtctga
DBGET
integrated database retrieval system
