Oryzias latipes (Japanese medaka): 101170614
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Entry
101170614 CDS
T02443
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04120
Ubiquitin mediated proteolysis
ola04137
Mitophagy - animal
ola04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101170614 (prkn)
04120 Ubiquitin mediated proteolysis
101170614 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
101170614 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101170614 (prkn)
04121 Ubiquitin system [BR:
ola04121
]
101170614 (prkn)
03029 Mitochondrial biogenesis [BR:
ola03029
]
101170614 (prkn)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
101170614 (prkn)
Membrane trafficking [BR:
ola04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
101170614 (prkn)
Aggrephagy
Other aggrephagy associated proteins
101170614 (prkn)
Xenophagy
Other xenophagy associated proteins
101170614 (prkn)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
101170614 (prkn)
Mitochondrial biogenesis [BR:
ola03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
101170614 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
101170614
NCBI-ProteinID:
XP_023818842
LinkDB
All DBs
Position
15:12961818..12972976
Genome browser
AA seq
466 aa
AA seq
DB search
MRRLMIVFVRYNLGPGVAVELQEGASVAELKKVVGSQQGVPPEQLRVLFAGRELQSTSSL
QSCDLPEQSTVHVVPPPSRSSSSQLLLFQEPQGSEEEQESLTRLDLSSSRLPATPADLTG
TLKDGEMGDGGQRLQEEGELIPGTSVRSRSSFFVYCKTCRSIQPGKLRVRCRTCKQTALT
LSRGPSCWDDVLIPGRIHGNCQSEGCCGNEGEFYMKCASHPTSDDDVSVALDLVMINNKN
VPCIACTDIMGVVLVFQCSERHVICLDCFRLYCQSRLNERQFVHHAAIGYSLPCAAGCED
SLIKELHHFRVLGDDQYARYQQYATEECLLKMGGLMCPAPGCGAGLLPSDPCRRVECERQ
LGCGFVFCRECREAYHQGECRACQAPPMGDVEQGFVVDEEASRRGRWEQASQRLIQEMTK
PCPNCSVPVERNGGCMHMHCALCQADWCWLCGVPWNRECMGNHWFG
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgagaaggctgatgatcgtgttcgtgcgctacaaccttggccccggtgtggccgtggag
ctccaggagggggcgagtgttgccgagctgaagaaggtggtggggagtcagcagggcgtc
cccccggagcagctcagggtgctttttgctgggagggagctgcagagcacctcctccctg
cagagctgtgacctcccagagcagagcaccgttcacgtggtccctcccccttcaagatcg
tcctcctctcaactgctgctctttcaggaacctcaaggcagcgaggaggagcaagagagc
cttacaaggctggacctgagctcctcacgcctccccgccacccccgcagacctcacaggt
accctaaaggatggagagatgggggatggaggacaaaggttacaggaggaaggtgaactt
atacctgggacaagtgtgcgtagccgcagttctttctttgtctattgtaagacctgcagg
tccattcagcctggaaaactccgggttcgatgccggacctgcaaacagacagcgctcaca
ctgagcagggggccatcttgctgggatgatgttctaattcctggacgtatccatggaaac
tgccagtcggaaggatgctgtggcaatgaaggggagttctacatgaagtgtgcttctcat
ccaacttcggatgatgacgtctctgtggctctggacctcgtcatgatcaacaataaaaac
gtcccctgcatcgcctgcaccgacatcatgggcgtggtcctggtcttccagtgctcagag
cgccatgtgatatgtctggactgtttccgtctgtactgtcagagccgcctgaacgagcga
cagtttgttcaccacgctgcgattggatactctctgccgtgtgcagcgggctgtgaggac
tcgctgatcaaagagctgcaccatttcagagttctgggtgacgaccagtatgcacggtac
cagcaatatgccactgaggagtgcctactgaaaatgggaggactcatgtgtccggcacct
ggttgtggggcggggctcctgccctctgacccctgcaggagggtggagtgtgagagacag
ctgggctgtggctttgtcttctgtagggagtgcagggaggcctaccatcagggggagtgc
agggcatgccaagccccgcctatgggtgatgtggagcagggctttgtggtggacgaggag
gcgtctcggcggggcaggtgggagcaggcatcccaacgtcttattcaggagatgaccaag
ccctgccccaattgttcagtccctgtggagagaaatggcggctgcatgcacatgcattgt
gctctgtgccaggcagactggtgctggctctgtggcgttccctggaacagggagtgcatg
ggaaaccactggtttggatga
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