Ostreococcus lucimarinus: OSTLU_87525
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Entry
OSTLU_87525 CDS
T01029
Name
(RefSeq) predicted protein
KO
K06100
symplekin
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OSTLU_87525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_87525
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_87525
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
OSTLU_87525
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
OSTLU_87525
U7-dependent histone pre-mRNA processing factors
OSTLU_87525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
5002334
NCBI-ProteinID:
XP_001418234
JGI:
87525
UniProt:
A4RYW8
LinkDB
All DBs
Position
6:379583..382894
Genome browser
AA seq
1103 aa
AA seq
DB search
MTTRADACARLLDDAARATTDDDAVDALARVAAIASASASANDAAEASALTAIVERVIEF
GRADNATTRRSAASACETLGKAREGWLGACARALGEMTRDEDAGTAKRASAGVGALFREA
LIVSAVKGNATRVVKTVKDAWSAAREAIEGASAVAVDESANEGTRMACAKTTETAILALA
GEGWGSNVVKPGHKTLNLEEMMADAVALSEKLQEALRNLSEGAKPTGPLALVLVAALGKL
SVKKAELAAGCTPVLIAYAKAHAVREKAEIEANERASAATASVSKELKNVLLDVLRNGPT
QAVEGGMMNEISTICRDLGAGEAVDSALRHRERTSRGEPLGEKRASFLTPIGGGFKRARL
REQVPPPPPPQIVAAPMTEPGILHQILVTLAALVNSADRSMLDAFITQLAPPALADAILA
NLNHLPPASQYYLAGRGANAPRPPPPPPISTMVTVPEPPEEPAEPLSVVIKVDDLDAEVA
EAFRLEAIQRMLAVGSSVAEYGGAEKVTLAGPLRSSLLARLAASGAAKSAGASLEEETMA
IASALLFTAEGGGVYETEGVNMLMKWLTTLYAQEVAFEFSYVPYDQAISAAIECLTRGVA
GATSTTAMASGAKKPLSQLLCDVPSLPGVVWRAIRVMCRLEEGDETAQYPTTEETVVLVL
GVLQDIILERPPARDEALEVCLACAMQDDDAVRGKAIRLIANRLHPVKHLTERIEAYAKD
GLERGRELGKKALVEAKALVEAEAKVKEEQDAAKAAAEEDAPEDDAMETGTEAKTLETEV
EEEQVDHIAKAADSAVGPMLLYCALCARNLKLLTGLFEAYATLEPEIQLALHRPVNGLAR
ACGPNCLELCEIIASPPEGSLSLAVQCLNTLASVAVVPAPSTLLNAAESLCASHDGDVKY
LAPLVCSFDEERVRDLLPQFIHASSEIFASVLDTILSVPEEEAVLSPVAILIAVHEVQVG
QAGVTLKQLVDACSVCFDRPDVFTPQVLATALQQMVEFTPLPLLFMRTVIQAETIAPQLK
EFTLGLLRTLINRQVWKMDQKIWEGFLRCLKRAAPQSFPLMVELPAPVFGDVLQKFPALK
DNLRQFAAKSSVPKAIAAVLNEP
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgcgcgcggacgcgtgcgcgcggctgctcgacgacgcggcgcgagcgacgacg
gacgacgacgccgtcgacgcgctcgcgcgcgtcgcggcgatcgcgagcgcgagcgcgagc
gcgaacgacgcggcggaggcgagcgcgctgacggcaatcgtcgagcgggtgatcgaattc
ggacgcgcggataacgcgacgacgcggagaagcgcggcgagcgcgtgcgaaacgctgggg
aaggcgcgcgagggatggctgggggcgtgcgcgcgcgcgctgggggagatgacgcgggat
gaagacgcggggacggcgaagcgggcgagcgcgggcgtcggcgcgctgtttcgagaggcg
ttgatcgtgagcgcggtgaagggaaacgcgacgcgagtggtgaagacggtgaaggacgcg
tggagcgcggcgagggaggcgatcgaaggcgcgagcgcggtggcggtggatgagagcgcg
aacgaagggacgcggatggcgtgcgcgaagacgacggagacggcgatcctggcgctcgcg
ggcgagggttggggatcgaacgtcgtgaagccggggcacaagacgctgaatttggaggag
atgatggcggatgcggtcgcgctgtcggaaaaattgcaggaggcgctgcgaaatttgagc
gaaggggcgaaaccgacgggaccgctggcgctcgtgctcgtggcggcgttggggaaattg
agcgtgaagaaggctgagctcgccgcggggtgcacgccggtgctcatcgcgtacgcgaaa
gcgcacgccgtgcgagaaaaagctgagatcgaggccaacgagcgggcgtcggcggcgacg
gcgagcgttagtaaagagttgaagaacgtgttgctcgacgtgttgcgcaacggcccgacg
caagccgtcgagggtgggatgatgaatgaaatttccaccatctgtagagatctaggcgcg
ggcgaagccgtcgacagcgcgcttcgtcaccgcgagcgaacgagtcgaggggaaccgctc
ggggaaaagcgcgcgagctttttgaccccaatcggcggcggtttcaagcgcgcgcgtctg
cgcgaacaagtcccgccgccgcctccaccgcaaatcgtggcggcgccgatgacggaaccg
ggaatcctgcatcaaattttagtcacgctcgcggctttggtgaatagcgccgatcgctcc
atgctcgatgccttcatcacgcagctggcgccgccggctttggcggatgcgattctcgcc
aatctcaaccacttgccgccggcgagccagtactacctcgctggtcgcggggcgaacgcg
ccgaggccgccgccaccgccgcccatctcgacgatggttaccgtgccggagccacccgag
gaaccggcggaaccgctatcggtcgtgatcaaggttgacgacctcgacgccgaggtcgcc
gaggcgtttagactcgaagccattcagcgcatgctcgcggttggaagttccgtggcagag
tacggtggggcggagaaggtcactctcgctggcccgcttcgcagctcattgctcgcccgc
ttagccgcgtccggggctgcaaagtcagccggcgcttcgctggaagaagagacgatggcc
atcgcgtccgcgctgctcttcacagccgaaggcggtggtgtgtacgagacagagggtgtg
aacatgctcatgaaatggctcacgacactgtatgcgcaagaagttgcgtttgagtttagc
tacgtgccgtacgatcaggcgatttctgcagccatagagtgtttgacgcgcggcgtcgcc
ggggcgacgtccacgacggcgatggcgagcggggcgaagaagccgctctcacagctgttg
tgcgacgtgccttcgttgccgggggtcgtgtggcgcgctatccgcgtgatgtgtagatta
gaggaaggtgatgagacggcgcagtacccgacgacggaagaaaccgtcgtcctcgtgctc
ggcgttttgcaagacatcattttggagcggcctccagcccgggacgaggcgttggaggtt
tgcctggcgtgtgcgatgcaagacgacgacgccgtgcgcggaaaagcgatccgtctaatc
gctaatcggttacacccggtcaagcatctcaccgaacgcatcgaagcgtacgccaaggat
ggtctcgagcgcggtcgggaattgggcaaaaaggcgctcgtcgaagccaaggcgctcgtc
gaagccgaggcgaaagtcaaagaggagcaagatgcggccaaggcagcggcggaggaagat
gcgcccgaagacgatgcgatggagacaggaacggaagcaaagacgctggagacggaagta
gaagaagagcaggtggaccacatagcgaaagccgcagactccgccgtcggcccgatgttg
ctgtattgcgctctctgcgccagaaatctgaagctcttaaccggattgttcgaggcgtac
gcgacgctcgagccagagattcagcttgcgttgcatcgaccggtgaacggcttagcgcgc
gcgtgcggaccaaactgtttggagctttgcgaaatcatcgcctcgccgccggagggttcg
ctttccctcgcggtgcagtgcttgaatacgctcgcttccgtcgccgtcgttccggcaccc
tcgactttgctcaacgcggcggagtcgctgtgtgcctctcacgatggcgatgtcaaatac
ctcgcgccactcgtgtgctcgttcgacgaagaacgagtgcgcgatttgctcccgcagttt
attcacgcctcgagcgaaatatttgcgtcggttttggacaccatcttgtccgtgcccgaa
gaggaggcggtgctcagccccgtcgccattctcatcgccgtgcacgaagttcaggttggt
caagcgggcgtcacgctcaagcagctcgtggatgcttgttcggtgtgcttcgatcgcccg
gacgtattcacgccgcaggtgctcgccacggcgcttcagcaaatggtcgagttcacgccg
ttaccactgctcttcatgcgcaccgtcatccaagcggaaaccatcgctccgcagctcaag
gaatttaccctcggcttgctacgcacgctgatcaaccgtcaagtgtggaagatggaccaa
aagatttgggaaggtttcctccgatgcctcaagcgcgcggcgccgcagtcgttcccgctc
atggtcgagctccccgctcccgtcttcggcgacgtcttgcagaaattccccgcgctcaag
gacaatttgcgtcaattcgccgccaagtcgtccgtcccgaaagcgatcgccgccgtgtta
aacgagccctag
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