Oryzias melastigma (Indian medaka): 112159689
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Entry
112159689 CDS
T07439
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03250
Viral life cycle - HIV-1
oml04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112159689 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
112159689 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112159689 (samhd1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112159689 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
SAM_1
SAM_2
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
112159689
NCBI-ProteinID:
XP_024149691
Ensembl:
ENSOMEG00000012990
LinkDB
All DBs
Position
LG7:10898790..10908842
Genome browser
AA seq
626 aa
AA seq
DB search
MENRKRPLDSMLSSNDRFKTPEKSRWPVLVPGSDLLQWGVEETCQYLLKEGLGEWENAFR
AQRITGVGLRYLNDAALKTIGIEYLGDRLRILHSLRKLWQIETEANKVFNDPIHGHVDLH
PLLIKIIDTPQFQRLRNIKQLGGTYFVFPGASHNRFEHSIGVGHLAGHLVQALNERQPEL
LISHRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKARPEVNWKHETASLDMFDHLVESND
LKVVMEEYGLVLPEDLDFIKEQIAGPLNTQNQGQKWPYKGRPEDKSFLYEIVANKRNGID
VDKWDYFARDCYHLGIQNNFDYQRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNCL
HRRAYQHKVGNIIETMITEAFLKADPYIQIEGAEGKMFTLSTAIDDMVAYTKLTDYVFEQ
ILNSSSSELSEAREILHNIVCRRLYKCLGQTQPDKTVTVNQETIKMWEKELSESTPQSGN
AVMTLHSEDFIVNVIVMDYGMKEKNPINNVRFYCKNDPNKAIQIRKNQVSKLLPEHFAEQ
LIRVYFKKTDSESLEVAKKHFVQWCINKNFSKPQDGDIIAPELTPLKLSWCNSNEGEDSD
EAKPLGRTATLVNGHKKIKTQLFKKK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaaagcgacccctggactccatgttgagctccaacgaccgctttaaaacc
ccggagaagagccggtggccggtcctggtgccggggtctgacctgctgcagtggggagtg
gaggaaacctgtcaatatctgctaaaggagggtctcggggaatgggagaatgcgtttaga
gcacaaagaatcacaggagttgggcttcggtatctcaacgatgcagcgctgaaaacaatt
ggcattgagtatctaggtgaccgtctgcgcatcctccacagcctcaggaaactctggcaa
atagaaacggaggcaaacaaggtgttcaatgaccccattcacgggcatgtggatttgcac
cccctcctcatcaaaatcattgacacgccacagttccagagactccggaatatcaagcag
cttggagggacatactttgtttttcctggagcgtcccacaaccgttttgaacacagtatt
ggtgtgggtcacttggctggacaccttgtgcaggctctaaatgaaagacaacctgaactg
ctcatctctcatagagacatcctgtgtgtgcagattgcagggctctgccatgacctgggt
catggaccattttcccacatgtttgatggcatgttcatccctaaagcacgcccagaagtt
aattggaagcacgagacagcatctctggacatgtttgatcatctggtggagagcaatgac
ctgaaggttgtgatggaggagtatggcctcgtgcttccagaggacctggacttcataaaa
gagcagattgcaggacctctaaacactcaaaatcaaggccagaagtggccgtacaaaggc
agacctgaagacaagtccttcctctatgagattgtagccaacaagcggaatggtattgat
gtggataaatgggactactttgccagggactgttaccatttgggcattcagaacaacttt
gactatcaacgattccttaaatttgcccgggtgtgtgaggtcgacgggcagaagcacatc
tgcactagagacaaggaagttggaaatctctatgacatgttccacacgagaaactgtctg
cacaggcgagcttaccagcacaaagtgggcaacatcatagagacaatgatcacagaggcc
tttttaaaagcagatccatacatacaaattgaaggtgcggaggggaagatgttcactctc
tccacagctatagatgacatggtggcctacaccaaactaacagattatgtgttcgaacag
atcctcaactcctcctcttcagagcttagtgaagcgagggagatactgcacaacattgtc
tgcagacgtctctacaaatgtctgggacaaactcaaccagacaaaactgtgactgtcaac
caggaaaccataaagatgtgggagaaagagttatctgaatccactcctcagagtggcaac
gctgttatgactctgcactcagaggactttatcgtcaatgtcattgttatggactacggg
atgaaggagaagaaccccatcaacaatgtgcggttctactgcaagaacgacccaaacaaa
gccatccagatccgcaaaaaccaggtgtctaaacttcttccagagcattttgccgagcag
ctgatccgagtgtacttcaaaaagacggacagtgagagtctggaggtggccaagaagcac
tttgttcagtggtgcataaacaagaacttctcaaagcctcaggacggagacataatagcc
cccgagctgactcctctcaaactcagctggtgcaacagcaacgaaggcgaggacagcgac
gaggcgaagccattaggaagaaccgcgactctcgtgaacggacacaagaagatcaaaact
cagctgtttaagaaaaaatga
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