Oreochromis niloticus (Nile tilapia): 100707815
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Entry
100707815 CDS
T06104
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
3.6.4.13
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100707815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100707815
03036 Chromosome and associated proteins [BR:
onl03036
]
100707815
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100707815
mRNA degradation factors
5'-3' decay
Decapping complex
100707815
Chromosome and associated proteins [BR:
onl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100707815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
MS_TIM-barrel
Motif
Other DBs
NCBI-GeneID:
100707815
NCBI-ProteinID:
XP_013128042
Ensembl:
ENSONIG00000013748
UniProt:
A0A669CJ29
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All DBs
Position
LG22:12867456..12881753
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AA seq
487 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPAAVQPAPTTQGKTLGAPQKAGGASQDGGGIK
FGDDWKKSLQLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQICIQL
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEYHSTSGDCDVEEVEE
KRQQDST
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaatgtgggcccggtcgtcatgggactgaataagcagaac
gggcagcttagagggcagaccaaaccagctgcagtccagccagcaccaacaactcaagga
aagactttgggtgctccccagaaagcaggaggagcctctcaggacggaggtggtattaag
tttggagatgactggaaaaagagcctacagctccctcccaaagacaacagggtcaaaacc
tcagatgtgacgtccacaaaggggaatgagtttgaagattattgtctcaaaagagaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctattcaggaggagagcatt
cccatcgccctgtctggacgggacattctggcccgagccaagaatggaacagggaaaagt
ggagcctatctcatcccactgctggaaaggatagacctgaaaaaggaccacatacaggcc
attgtcatggtgcccactcgtgagctggcactgcagatgagccagatctgcatccagctc
agcaaacacctgggaggagtcaaagtcatggccaccaccgggggcaccaacctgagagat
gacatcatgcgtctggatgagaccgtgcatgtggtcatcgccacgcctggcaggatcctg
gacttgataaagaagggagtggcaaaggtggataaagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcattgaagatattattagtttcctg
gccaagaacagacagatcctgctctactctgcaaccttccccatcagtgtgcagaagttc
atggccaagcaccttcagaagccctatgagataaacctgatggaggagctgactctgaag
ggcattactcagtactatgcctacgtcacagagaggcagaaagttcactgcctcaacaca
ctcttctccaggcttcaaatcaaccagtcaatcatcttctgtaactccactcagagagtg
gagctcttggccaagaagatcactcagctgggctactcctgcttctacatccatgctaaa
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaat
ctggtgtgcactgatctgttcaccagaggaattgacattcaggcggtaaacgtggttatc
aacttcgacttcccgaagaacgccgagacttacctccatcgtattggaagatcagggcgg
tttggtcacctgggcttggccatcaacctgatcacatcggaggatcgcttcaacctgaag
gccattgaagaccagctggtgaccgacattaagcccattcccagcagcatcgacaagagc
ctctatgtggccgagtaccactcaactagcggggattgtgacgtggaggaggtcgaggag
aagcgccaacaggacagcacctaa
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