KEGG   Oceanithermus profundus: Ocepr_0915Help
Entry
Ocepr_0915        CDS       T01369                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
opr  Oceanithermus profundus
Pathway
opr03030  DNA replication
opr03410  Base excision repair
opr03420  Nucleotide excision repair
opr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:opr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ocepr_0915
   03410 Base excision repair
    Ocepr_0915
   03420 Nucleotide excision repair
    Ocepr_0915
   03430 Mismatch repair
    Ocepr_0915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:opr03032]
    Ocepr_0915
   03400 DNA repair and recombination proteins [BR:opr03400]
    Ocepr_0915
Enzymes [BR:opr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ocepr_0915
    6.5.1.6  DNA ligase (ATP or NAD+)
     Ocepr_0915
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Ocepr_0915
DNA replication proteins [BR:opr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Ocepr_0915
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Ocepr_0915
DNA repair and recombination proteins [BR:opr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Ocepr_0915
   NER (nucleotide excision repair)
    Other NER factors
     Ocepr_0915
   MMR (mismatch exicision repair)
    Other MMR factors
     Ocepr_0915
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ADR36372
UniProt: E4U4G9
LinkDB All DBs
Position
930355..932070
Genome map
AA seq 571 aa AA seqDB search
MTFQRFVATLLEVERASSRIAMVKMLAEAFRELPPEEVPLAVLLLQGRVAPEFEGLEFGV
AEKEAAKALALALGRDEAETVQAVKEKGDIGAYALEVLPRRAGGLSLRHVYGELRAIAED
AGPGSQARKRERLSRLVAEASPEEAAVILRTVTGRLRLGVGDATVLEALALAFLGDRAKK
PLLERAYNLTSDLAYVARLALEGEEALRQVKLEVGKPVRMMLAERLPGPEQIMEKLGPHF
AEHKYDGERVQVHFDGERFWVYSRRLENITHQYPDLLEALREVQHGPFILEAEAVVTDPV
TGEMRPFQNVLNRKVKHLTPELLEKYPIKGFVFELLYADGEVLIERPYSERRERLERWFR
PHERLELSTKRFVETTEELVQFFDASIEAGCEGLVCKKPDGDYEAGKRGFKWVKYKRGIA
GKLSDTLDLVIVGAWLGRGRRAGTYGSLLAAAYNPDEDRFETLTKVGSGFSDEDLNEVLP
RRLDPYRRGERHPRVWSLLEPDVWFEPVQVIEVEAQEITLSPNHTCAFGAVQEGRGLALR
FPRFVRYRDDKSPEEATTTKEVVEMYKNQWA
NT seq 1716 nt NT seq  +upstreamnt  +downstreamnt
atgaccttccagcggttcgtcgcgacgctgctcgaggtggaacgggcgagctcgcggatc
gccatggtgaagatgctggccgaagccttccgcgagcttccgcccgaggaggtgccgctt
gcggtgctgctccttcaaggtcgggtggcccccgaattcgaggggctcgagttcggcgtg
gctgagaaggaggcggccaaggcgttggcgctggcgctggggcgggacgaagcggagacc
gtccaggccgtcaaggagaagggcgacatcggcgcctatgcgctcgaggtgctgccccgc
agggccggaggtttgtccttgcggcacgtctacggcgagctgcgcgccatcgccgaggac
gccggtcccggttcccaggcgcgcaagcgcgagcgcctgtcgcgcctcgtcgccgaggcc
agccccgaggaggcggcggtgatcctgcgcaccgtgaccgggcggctgcgcctgggggtg
ggcgacgccacggtgctggaggccctggcgctggccttcctgggcgaccgcgccaagaag
ccgctcttggagcgggcctacaacctgacctccgacctggcctacgtggcgcggctggcc
ctggagggtgaagaggcattgcggcaggtgaagctcgaggtgggcaagccggtgcggatg
atgctggccgaacggctgccgggccccgagcagatcatggagaagctgggcccccacttc
gccgagcacaagtacgacggcgagcgggtgcaggtgcacttcgacggcgagcgcttctgg
gtctactcgcgccggctcgagaacattacccaccagtaccccgacctgctggaggcgctg
cgcgaggtgcagcacggacccttcatcctcgaggccgaggcggtggtcaccgacccggtg
accggcgagatgcgcccattccagaacgtgctcaaccgcaaggttaagcacctgacgccc
gagcttctggagaagtaccccatcaagggcttcgtcttcgagctgctctacgcggacggc
gaggtcttgatcgagcgcccctacagcgaacggcgcgagcggctcgagcgctggttccgc
ccccacgagcggctcgagctttccaccaagcgcttcgtcgagacgaccgaggagctggtc
cagttcttcgacgcctccatcgaggccggttgcgaggggctggtctgcaagaagcccgac
ggcgactacgaagccggcaagcgcggcttcaagtgggtcaagtacaagcgcggcatcgcc
ggcaagctctccgacaccctcgacctggtcatcgtcggcgcctggttggggcgggggcgg
cgcgccggcacctacggctcgctgctggccgcggcctacaaccccgatgaagaccgcttc
gagaccctcaccaaggtgggttcggggttcagcgacgaggacctgaacgaggtgctgccc
cggcggctcgacccctaccgccgcggggagcggcacccgcgcgtctggtcgctgctcgag
cccgacgtctggttcgagcccgtccaggtcatcgaggtcgaggcccaggagatcacgctc
agccccaaccacacctgcgccttcggtgcggtccaggaaggccgcggcctggccctgcgg
ttcccccgcttcgtccgttaccgcgacgacaagagtcccgaggaggcgaccaccacgaag
gaagtggtggagatgtacaagaaccagtgggcttag

DBGET integrated database retrieval system