KEGG   Ochrobactrum pseudogrignonense: A8A54_22075Help
Entry
A8A54_22075       CDS       T04415                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ops  Ochrobactrum pseudogrignonense
Pathway
ops03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ops00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A8A54_22075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ops03400]
    A8A54_22075
Enzymes [BR:ops01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A8A54_22075
DNA repair and recombination proteins [BR:ops03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A8A54_22075
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ANG99235
UniProt: A0A1A9FVN3
LinkDB All DBs
Position
2:complement(759291..761939)
Genome map
AA seq 882 aa AA seqDB search
MARDKLATYKKKRDFEKTQEPKGANRPKASMKPRFVIQKHAATRLHYDLRLELDGVFKSW
AVTRGPSLDPGDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWTPEGELTAR
EALVKGDLKFTLEGKRLRGSFVLVRMKSDRNGSKRTNWLLIKHQDAFSVSGDGAAVLDDN
DTSVASARSMDMIAAGKGRKPRPFMVETDAIAADAVWDSSQGLAAGKREKNKRMSETVKS
TPATMPDFVPPQLCETHDRPPASKNWIHEIKFDGYRIQMHVNSGAVTLRTRKGLDWTERF
PAIVKSAAALPDGIIDGEICALDESGAPDFAALQAALSEGNTDALVYFAFDLLFDGIEDL
RQLALTHRKQRLEQMVESVSEDPLIRYVTHFETGGEAVLRSACRLSLEGIVSKQADTRYV
SGRSDSWVKSKCRSGHEVVIGGYATTNGKFRSLLVGVNRDRHFVYVGRVGTGYGAKTVAG
ILPKLRALEARKSPFTGIGAPKGGTDIKWLKPQLVAEIQFAGWTADGLVRQAAFKGLRED
KPAKEVVAEKPAAPSDVDVPENDTAKPGDILTSQSGGKPNIMGVLISSPDKTLWPDAGDG
KAVTKLDLARYYEAVGPWLINHVKGRPCSVVRAPDGLQGEQFFQRHALPGTSNLIELVEV
FGDRKPYLQIDRVEGLAAVAQMGGVELHPWNCLPYQPEIPGRLVFDLDPGPDVAFSSVIE
AALEMRDRLDQLGLVSFCKTTGGKGLHVVTPLGGGKGKKLSWAEAKGFAHDVCQQMAGDH
PDRYLIKMTKSQRKGRIFLDYLRNDRMSTAVAPLSPRMREGATVSMPLNWTQVRKGLDPK
RFTIRTVPALLGKTKVWQDYCDEQRSLREAIKKLEKSIRPPA
NT seq 2649 nt NT seq  +upstreamnt  +downstreamnt
atggcccgcgataaactcgcaacctacaaaaaaaagcgcgactttgaaaagacgcaggag
ccaaaaggcgcgaaccggccgaaggcctccatgaagccgcgcttcgttattcaaaaacac
gccgcgacgcgactgcattacgatctgcgtcttgaacttgacggtgtcttcaaatcctgg
gccgtgacccggggaccttctcttgatcccggcgacaagcgcctggcggtcgaggtcgaa
gaccatccgcttgattacggggatttcgagggaacgatccccaaaggtcaatatggcggc
ggcacggtgatgctctgggaccgtggttactggacaccagaaggagaattgaccgcccgg
gaggcgcttgtcaaaggtgatctgaaattcacgctcgaaggtaagcgactgcgtggcagc
tttgtgctggtgcgcatgaaatcggatcgcaatggctccaagcgcaccaactggttgctg
atcaagcatcaagacgcgttttccgtgtctggtgacggtgctgccgttttggacgacaat
gacacttctgtcgcatccgctcgttccatggatatgatagcagccggcaaaggcagaaag
ccgcgccccttcatggtcgaaactgacgctatcgcggcagacgccgtttgggatagcagt
cagggccttgctgctggaaagcgcgaaaagaacaaaaggatgtcggagaccgtcaagtca
acgcccgccaccatgccggacttcgtcccaccccaattatgtgaaacccacgacaggccg
ccggcttcgaaaaactggattcacgaaattaaattcgacggctaccgcatccagatgcat
gtcaattctggcgcagtcacattgagaacccgaaagggcctcgactggaccgaaagattt
ccagccattgtaaaaagcgcggcagcactccccgacggcatcatcgatggggaaatctgc
gcgctggacgaaagtggagcacctgattttgcagcattgcaggcagctttgtccgagggc
aacaccgatgccctcgtttatttcgcgtttgatctgctttttgacggcatcgaggacctg
cggcaacttgctcttacccaccgcaagcaacggctcgagcagatggtagaaagcgtcagt
gaggatccgctgatccgctatgtgacacattttgaaacaggcggggaagcggttctgcgt
tccgcctgtcgtctttcgctggaaggcatcgtttccaaacaggcggacacccgctatgtc
tcgggtcgttccgacagctgggtcaagtccaaatgccgttcaggccatgaagtggtgatt
ggcggttatgccacgaccaatggcaaattccgttctttgctcgtcggcgtcaatcgcgac
agacatttcgtatatgttggtcgtgtcggtaccggctatggcgcaaaaaccgttgcgggc
attctaccgaaacttcgtgcgcttgaggccaggaaatcgccttttaccggtatcggtgcg
cccaagggaggcaccgatatcaaatggctgaaaccgcaactggtcgcagagatacaattc
gccggctggacggcagacggcctcgttcgccaagcggcgttcaaaggcttgcgcgaagac
aagccagcgaaagaggtggttgccgaaaagccggcagcgccgagcgatgtcgatgtgcct
gagaacgacaccgcaaagcctggagatatcctcacctctcaatcaggcggcaagcccaat
atcatgggcgtattgatttccagccctgataaaacgctctggccggatgccggggatgga
aaagcggtcacaaaactcgatctcgcccgctattacgaggcggtgggaccgtggttgatc
aaccatgtcaaaggccggccctgctcggtggttcgcgcgcccgatggtttgcagggcgag
cagttcttccagcgtcacgcgctcccgggtacctcgaacctgatcgaactcgtagaggtg
tttggtgacaggaagccctatctccagatcgatcgggtggaagggctcgcagcagtcgcg
caaatgggtggcgtcgaactgcatccgtggaattgtttaccctatcaaccagaaatccct
ggtcggctggtgtttgatctcgatcctggccctgacgtggctttttcgagcgttatcgaa
gcggcgctggaaatgcgcgatcgccttgatcagcttggtctggtcagcttctgtaaaacc
acgggcggcaagggactgcacgtagtcacgccgcttggcggtggcaaaggcaaaaaactc
agctgggcagaagccaagggtttcgcacacgatgtctgccagcaaatggccggcgaccat
cccgatcgctacctgatcaaaatgaccaaaagtcagcgcaaaggccgtatttttctggac
tacctacgcaatgaccgcatgtcgacagccgttgcaccgctctcacccagaatgcgcgag
ggggcgacggtgtcgatgccgctcaactggacccaggtcagaaagggcctcgaccccaag
cgttttacaattcggaccgttcccgcgctgctcggaaagacaaaggtctggcaggactat
tgtgacgaacaacgttcccttcgtgaggcgataaagaagctcgaaaaatcgatacgtcca
ccagcttga

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