Oryza sativa japonica (Japanese rice) (RefSeq): 107278090
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Entry
107278090 CDS
T01015
Name
(RefSeq) general transcription factor IIE subunit 1-like
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107278090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
107278090
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
107278090
Prokaryotic type
Archaeal type
TFE
107278090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Rrf2
Zn_ribbon_SprT
Sgf11
Zn_Tnp_IS1595
DUF3363
Zn-ribbon_8
A24_N_bact
Motif
Other DBs
NCBI-GeneID:
107278090
NCBI-ProteinID:
XP_015619125
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All DBs
Position
12:1691728..1712755
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AA seq
490 aa
AA seq
DB search
MASMEPLNRMVRMVARAFYDNVSLARDPKSARGDNCGLAVVVLDALTRRRQWVREEDLAK
ALKISSKQLRRILQFFEEEKLVRRCHRKESPKGVNISNNVSGTAGDVHPFTKGGEKAKMH
THSYCCLDYAQVYDVVRHRIHRMRKKLKDELDDRDTVQHYVCPNCKRRYSAFDALQLVSD
MDDYFHCEHCKEQLLPESEKLTLDEVVCGGDNAIKHKHDKLKDMQQRMEEQLKPLIAVLD
RVKDLPFPSFMSLQDWERATMEASANGAVGSSQNSEGRYSSKPMPFLGETEVEVNFLGST
GAQEGVESGMESIKPQPSWMNRKSTVLTGEHKGEISNTADLDQSSEAKSDKKQLSEKDEM
KSIQEAYAKAYYEAIQKRQEDEDKRMIQEESLTCISDQPFASDAQFERRLGAKSKRDDGG
DSGDDGIEMKVEQPTGNIGEVYKLADLDVETQESIDDDDDDDLVWDSRTDGSKFDTSSPI
EWEVQNVWKV
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatggagcccttgaaccggatggtgaggatggtggcgcgcgcattctacgac
aacgtctcgctggccagagaccccaagtccgctcgcggcgacaactgtgggcttgccgtc
gttgtcctcgacgccctcaccaggcggcgccagtgggtccgagaggaagatttggctaaa
gcattaaagatttcctctaagcaactgcgccgcattctccagttttttgaagaagagaag
ctagtgagaagatgtcatcggaaggagtcaccaaaaggagtaaacatatctaacaatgtc
tctggcaccgctggtgatgtgcatccttttactaaaggaggagagaaagcaaagatgcac
acacattcctactgttgtttggactatgctcaggtatatgatgttgtaagacataggata
caccgcatgaggaaaaaattaaaagatgagttagatgacagagatacagttcagcattat
gtatgtcctaactgtaaaagaaggtattcagcatttgatgcactgcaacttgtaagcgat
atggatgactattttcactgtgagcattgcaaagaacaacttcttccagaaagtgaaaag
cttactttggatgaagttgtgtgtggtggtgacaatgcaataaagcataagcacgataaa
ctaaaggatatgcagcaaagaatggaggagcaattgaagccattaatagcagtacttgac
agggtaaaggatcttccttttccatcttttatgagtttgcaagattgggaaagagcaact
atggaggcatctgcaaatggtgcagttggttcatctcagaattcagaagggcgatacagc
agtaaaccaatgcccttccttggggaaacagaggttgaagttaatttcttaggaagtact
ggagcacaggaaggtgttgaatctggtatggaaagtataaagccacagccctcatggatg
aatcgtaagagtacagtcctcacaggggaacataaaggagaaatcagcaacactgcagat
ctggatcaaagttcagaagccaagagtgacaagaaacagctctcagagaaagatgagatg
aagagcatacaggaggcatatgcaaaagcttattatgaggctatccagaaaaggcaggaa
gatgaggacaaaaggatgatacaagaagaaagccttacatgtatttctgaccagccattt
gcttctgatgcacagtttgagaggcggttgggtgccaaatcaaaacgtgatgatggtggt
gactctggtgatgatggcattgaaatgaaagtggagcaaccaacagggaatataggagag
gtatataagttggctgatctggatgtggagacccaagaatcaattgatgatgatgatgat
gatgatcttgtttgggacagtaggactgatggctccaagtttgatacatcatcaccaatt
gagtgggaagtgcaaaatgtgtggaaggtttag
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