Oryza sativa japonica (Japanese rice) (RefSeq): 4329835
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Entry
4329835 CDS
T01015
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
4329835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4329835
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
4329835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
4329835
NCBI-ProteinID:
XP_015627645
LinkDB
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Position
2:complement(22917843..22924502)
Genome browser
AA seq
929 aa
AA seq
DB search
MAGGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSF
TVADNGTGISPTNFQALALKHHTSKISDFGDLASVATFGFRGEALSSLCALGKLTVETRT
KDEPVGTRLEFAHSGVVTGERKMARPVGTAVTVEKLFSTLPVRSKEFSRNIRKEYGKVIS
LLNAYALIAKGVRLVCTNTVGKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPFNVTI
SEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSSNAKQYPVAVL
NFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLREGIENLYCPQQCSFSINSVEDPGKEMD
PAIDGSDEDMCLTEKENVSAPENDDDMDETDSDDEVTPENQKVPSSVTTRVATGSTPKDV
SPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSI
MKFLSQNKRKHEDSCNLISEAPVLRRGTCLEQVRRTDLGVNSPTALTSRVSNIPEVNAPQ
GTNPLRHHSLQSFVPEMPEDSPQHSEPPNIVSHRDEVPQLRPCDVHATESEVDNQHDPCH
SKFGAPSRCSEVEPQNKLTNISLPDAHYDGHDTAAHSGQSSYPVMQFTLADLRRRRRHSF
MISHAKKGSFPEKSTRCYKAATLDNYVPDNEEGKSNSLAAATSELDKLFSKDDFGEMEVV
GQFNLGFIIGKLDQDLFIVDQHAADEKYNFENLSQSTTLNIQPLLQPLRLDLSPEEEVIV
SMNMSTIRKNGFVLAEDLHASPCNRYFIKAVPFSKNITFGAQDVKELISMLADSQGDCSI
ISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHG
RPTMRHLADLHAIKTEVLQNLAGSKATFS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggctcgtcgccggcgatacggccgatcggcaagtcggcggtgcaccggatc
tgctccggccaggtcatcttcgacctctcctccgccgtcaaggagctcgtcgagaacagc
ctcgacgccggcgccaccaccgtcgaggtcaccctccgctcctacggcgaggactccttc
accgtcgccgacaacggcaccggcatctcccccaccaatttccaggcgctcgctctgaag
caccacacctccaagatctcggacttcggcgacctcgcctccgtcgccaccttcgggttc
cgcggggaggcgctcagctcgctctgcgcgctggggaagctgacggtcgagacgaggacc
aaggacgagcccgtcgggacgcgcctggagttcgcgcactcgggcgtggtgaccggcgag
aggaagatggcgcggccggtcgggaccgccgtgaccgtcgagaagctgttctccacgctg
ccggtccggagcaaggagttcagcaggaacattcggaaggagtacgggaaagtgatctcc
ttgctgaatgcctatgcgttgattgccaaaggggtcagattagtttgcacaaatactgtt
ggcaagaattctaaatcggcggtgcttaggactcaagggagcagttcactgaaagataat
atcattaccgtatttggtctgaacactttcaagtgcctgcagcccttcaatgtgacaatc
tcagaaggctgccaagttgatggctttctttccaaacctggacctggtagtggtcgcaat
tcaggggatagacagttcttctatgttaatggcagacctgtggatatgccaaaggtttcc
aaacttgtcaatgagctgtacagaagctcaaatgccaagcaataccctgtggctgtattg
aatttctgtattccaaccacatcttatgatgtgaatgttgcgcctgataagagaaaaatt
ttcttctcatctgagcatgccattttgctatctttacgggaaggtattgagaatctgtac
tgccctcaacaatgcagtttctccatcaacagcgttgaagatcctgggaaggaaatggac
ccagccatcgatgggtctgatgaagacatgtgtttaacagaaaaggagaatgtttcagct
cctgaaaatgacgatgacatggatgaaacagatagtgatgatgaggttacaccagagaat
cagaaagtgccttcttcagtgacaacaagggtagccactggatctacacccaaagatgtg
agccccttgtcaagaggcccacctgctcagcttgatagatctactttgctttcagcctac
cggtatgaacaacgagaaaagacgcctacacgagtaaaaagttatccagcacaagcaaat
catgttagaacagggcttgctgcaaagtcttctccttcaagtgctgttcaaccttctatt
atgaaatttctatcacaaaataaaaggaaacacgaagacagttgcaatcttatttctgaa
gctccagtgctgagaaggggaacatgcttggagcaagtgaggagaacagatttaggagtg
aattcaccaactgcactaacctcaagagtatctaatattccagaggttaatgcacctcaa
ggaacaaatcctttgcggcaccattccctgcaatcttttgtacctgagatgccagaagat
tcaccacagcattctgaaccacctaatattgtttctcatcgtgatgaagtgcctcagttg
cgtccatgtgatgttcacgctacagaatctgaagtggataaccagcatgatccatgccat
tccaagtttggtgctcccagtcgatgttcagaagtggaaccccaaaataaactgacaaat
atttccttgcctgatgctcattatgatggtcatgacactgcagcacattctggacaatca
tcttatccagttatgcaatttacacttgctgatcttagaagaagaagaaggcatagtttt
atgatatcacatgcaaaaaaaggaagttttcctgagaaatcaacaaggtgttataaagct
gcgacactggataactatgtaccagataacgaggagggaaaatcgaattctttagctgca
gccaccagcgagttagataagcttttcagtaaagatgactttggagaaatggaggttgtt
gggcagtttaatcttggttttatcattggaaagctggaccaggacctatttattgttgat
cagcatgctgctgatgagaagtacaactttgagaacctttcacagtcaacaactttaaac
atacagcctctccttcaaccactgagacttgacctatcaccagaggaagaagttatcgtt
tctatgaacatgagcactatcagaaagaacggttttgttttagcagaagatctgcatgct
tcaccttgcaaccgctattttataaaagccgttcccttcagcaagaatattacatttggt
gctcaagatgtgaaggagttaatctccatgcttgctgacagtcaaggtgactgttcaata
atcagcagttacaagctcgacagaactgattctatttgtccttcaagggttcgtgctatg
ttggcttcgagggcttgccgaatgtctaccatgataggtgatccattgacaaaaactgag
atgaagaagatacttaagaatttgacaggattgaggtccccttggaattgccctcatggg
aggccaacaatgcgccatctagcagatctccatgctataaaaactgaagtgttgcaaaat
ctcgcaggatcgaaggcaactttctcatga
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