KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4336722
Entry
4336722           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4336722
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4336722
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4336722
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     4336722
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 4336722
NCBI-ProteinID: XP_015637038
LinkDB
Position
4:28833236..28846888
AA seq 1473 aa
MCLLFRMEEPSLEVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAP
QCATCGSRSIRDCDGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADG
TTIQGTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAH
KSKNKAPHETLPQDFWDFIPDDNQPPIFNVTKKILSPYQVFHMLKKLDPELINQVTRRRE
LLFLSCLPVTPNCHRVAEMPYGHLDGPRLAFDDRTKAYKRMVDVSRRIDDYHQHPQFGVF
ASSVVTSRVMECLKSSKLYSKKSDDESSASTDTYGTKWLKDIILSKRSDNAFRSIMVGDP
KINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKAN
QLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFD
GDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEK
AEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSE
VLTCSSGSFWLQNNTSSLFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLF
SDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGFTQV
SLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLP
ASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLLH
AISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGMYSD
HDLEGEPGAPVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGL
LFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNPWITHFHL
NQETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGNECVKNQTCCVTM
VVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQEDNELVLKVGMSEHCKSG
KFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHR
QHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDN
LSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYR
KRTEKTSKRRSALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLN
EVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSY
NKCVLGAANSISPELGSYIENRRSNRAVRPHQL
NT seq 4422 nt   +upstreamnt  +downstreamnt
atgtgtttgttgttcaggatggaggagccaagtcttgaggtgaataatcctgtggctgag
ctgaatgccatcaaattcagcctcatgaccagttcagatatggaaaagttaagtagtgcg
actattattgaaatgtgtgatgtgactaacgccaagttgggattaccaaatggtgcacca
cagtgtgcaacctgtggatcgcgaagcatacgtgactgtgatggtcattttggtgttatt
aagctagcagcaactgtgcacaattcatattttatcgaggaagttgtccagttgctaaat
cagatatgtcctggctgtctcactctgaagcaaaatggggacacaaagaaggctgatggg
acaacaattcaaggaacttgcaagtattgctcaaaggatggatcaaaactttaccctagt
ataatctttaagatgctaacaagtccaagagtaacactatccaggagtaaacttcaccgt
aacactagcgtgatggacaaaatgtcaattattgcagaagttgctggcggggtggcacat
aagtccaagaacaaggctccccatgaaacccttccccaagatttctgggatttcatacct
gatgataaccagccacctatattcaatgtgactaagaaaatattgtcgccatatcaagtc
tttcacatgctaaaaaagcttgatcctgaacttatcaatcaggttactcgaaggcgggag
ctattgttcctgtcatgtttgccagtgactcctaactgtcatcgtgttgcggagatgcca
tatggacatttagatggcccccgattagcttttgatgaccggacaaaagcttataagagg
atggttgatgtgagtaggagaattgatgattaccatcagcatccgcagttcggcgttttt
gcaagttcagttgtcacaagtcgtgttatggagtgcttgaaatcatccaagttatactca
aaaaaatcagatgatgaatcttctgcatctacagatacatatggaaccaaatggctaaaa
gatatcatcctcagcaaaagatccgacaatgcatttaggagtataatggtcggggaccca
aaaattaatttaaatgaaatcggtattcctatgggtttagctttgaacttggttgtttct
gagcaagttagttcttacaatttcgaaaccataaatttgaagtgcaacttgcaccttctt
accaaggaagtactgcttgtccgccgaaatgggaatcttatttttgttcggaaggcaaac
cagttagaaattggtgatattgcttatagactattgcaggatggtgatcttgttttggta
aataggccaccttcagttcatcaacattctctgattgccctatctgcaaaacttctgtca
actcagtcagctgtgtcaattaatccactatgttgtgatcctttcaagggagactttgat
ggggactgtttgcatggatatattcctcaatgtctgcaatcaagaattgagcttgaagaa
ctagttggtttaagtggccaactcttgaatcaacaagatgggcgaagtttggtgtcatta
acacatgactctctagctgctgcacatcagttaacaaatgcagatgttttcttggagaaa
gctgaatttcaacagcttcagatgttatcctcttccatctcattgacaccaatgccatca
gtttttaaatctacaaactctcaaggtcctctttggactggtaagcaactgtttggaatg
ctgctaccttatggtatgaatatcagttttgatcagaagttacacataaaagacagtgaa
gtgcttacctgctcatcaggatctttttggttacagaataacacatccagccttttctct
gtcatgttcaaagagtatggttgtaaggctcttgagttcctttcttccacccaggatgta
ctatgtgaattcttaaccatgtggggtttaagtgtctccctttcagatctctatctgttc
tcagaccattactcaaggagaaaactgagtgaggaagttcatctggcattggatgaagcg
gaagaggcttttcaaatcaagcaaatattgctaaattcagtatctataccaaatctgaag
tattatgatggaggtgatgatagatcaaacactgatgaacaatctggttttactcaagtc
agtctgccaatcatcagatcttcaatgacatcatttaagagtgtcttcaatgatctgttg
aagatggtgcagcagtatgtgagtaaagataattcaatgatgacaatgattaactctgga
agtaaaggtagtgttctgaagtttgttcaacagactgcatgtgttggtcttcaactacca
gcaagtaaatttccctttagaattccctcacaactatcatgtgtttcctggaatagacat
aaatctctcaattgtgaaatcactgacggcaccagtgaatgtgtgggaggccaagacatg
tatgctgttgttagaaattcttttcttgatggactaaatccgttagaatgtctactgcat
gccatatctggcagggcaaatttctttagcgaaaatgctgacgttcctgggactttgaca
aggaaactaatgtatcacttgagagatacatacgttgcttatgatgggactgttagaagt
tcttatgggcagcaaatagtgcggttttcttatgatactgctgatggcatgtacagtgat
catgatcttgaaggtgaacctggggcccctgttggctcttgggctgcttgttccatttca
gaagctgcctatggagctttggatcacccagttaacagtttagaggattcccctcttatg
aacttgcaggaagttttgaagtgccacaagggcacaaattctctggatcatactggtttg
cttttcctgtcaaagcatctaaggaaatatagatatggttttgagtatgcatcactagaa
gttaaggatcatctagaacgagtggacttttctgatatggttgacacggtcattatttta
tatggcggctcagatatgcagaaaacaaaaggaaatccttggatcactcattttcattta
aaccaggaaacaatgaagataaaaaggttaggactggaatttattgtaagagagattatt
gaccaatacaacaccttaagaaaacagttgaacaatgcgatcccttcagtttctatttcg
aacagcaaatgttctgtaggcaatgagtgtgtcaagaatcagacctgttgcgtcactatg
gtagtacaggtggaaattaactccatgtcgcaattggacgttatcaaggaacgggtgatt
ccaagcatcctggccacactgttgaaaggatttttggaatttaagaatgttaaggtgcaa
tgtcaagaggataatgaacttgttctgaaagtcggtatgtctgagcattgcaagagtggg
aagttctgggctaccctacaaaatgcttgcatcccaataatggagttgattgattgggag
cggagccgaccagagagagtatatgataatttctgctcatatggcatagactcagcatgg
aaattctttgtcgaatctttaagatccacaacagatgctattggaaggaatatccatcga
cagcacttactggttgtggcagactgcctatctgtgagtgggcagttccatgggctaagc
agtcaaggtttaaagcagcaaaggacttggttatcaatctcctctccattttctgaagca
tgcttttctaggcctgcacacagttttataaatgctgcaaagcgagattcagtggacaat
ctttctggtactctagatgcaattgcctggggcaaagaaccttgtgcagggtcgtcaggt
cctttcaagattctatattctgggaagtcacatgagacaaaacaaaatgagcacatatat
gactttctacataaccctgaagttcaggctcttgaaaagaatgtaatggatacctacaga
aaaaggactgaaaaaacttccaagcggagatcagcactcaattctgaaggcaatgctacc
atcaatggtggtgccatatcttttaatcagaagtttcttaatgctaaagttggtatatgg
gagaacatcattgacatgcgcacttccttgcaaaacatgcttcgggagtacacattaaat
gaagttgtcacagaacaagataaatcatgcttaatggaggccttgaaatttcatcccaga
gggtatgacaagattggtgtgggaataagagaaatcaagatcggagtgaatcctggtcac
ccgagctcaaggtgcttcattgtactaaggaatgatgatactactgcagacttctcttac
aacaagtgtgtccttggtgctgcaaattctatctcacctgaacttggaagttatatagag
aacagacgatctaatagagcagttcggccacatcagttgtag

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