KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4338212
Entry
4338212           CDS       T01015                                 
Name
(RefSeq) switch 2 isoform X1
  KO
K20098  DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4338212
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   Helicases
    4338212
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 4338212
NCBI-ProteinID: XP_015640459
UniProt: A0A0N7KKE7 Q5WMW4
LinkDB
Position
5:complement(8966225..8973340)
AA seq 856 aa
MSLHSLKETLQSSSFSQPQSESQPRSPPPLLARRPPKTSLSQQLLRLDASSSSSSFSVSP
PPPPRTSPTSDAAADDAPPLPEEEDEVPCIRPRASLPPAASLDSRGPYEPLALSPPGERP
VVQVPSSINCRLLVHQRDGVRFLYNLYRNNHGGVLGDDMGLGKTIQTIAFLSAVIGKDND
HGDQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLVLQKVETQRLEI
VITSFDTFRIHGKILCGISWDLVVVDEAHRLKNEKSKLYTACLEITTRKRFGLTGTIMQN
KIMELFNLFDWIVPGCLGDREHFRVYYDEPLKHGQRFSAPERFVQVADKRKKHLVSVLSK
FLLRRTKEETIGHLMLGKEDNIVFCRMSDVQKRVYRRMLQQPDVQILINKDLPCSCGSPL
TQVECCKRTEPHGIIWSYLHRDNPEGCSLCPFCLVLPCLGKLQQISNHLELIKPNLKDEI
EKQKKDAELAAAVFDTDIELVGGGAKSENFMGLSDAEHCGKMRALERLLSLWTLQGDKIL
LFSYSVRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQVFLISTRAGNL
GVNLVSANRVVIFDPSWNPAQDLQAQDRSFRFGQRRHVTVFRLLGAGSLEELIYSRQIYK
QQLSNIAVSGKIEKRYFEGVQDDKKFQGELFGICNLFRDLSDKLFTSEIIEMHGEHGKGN
TAETIGIREIVDTNIFGTQDQMKSSMTAIHNENKNLYHCGIVYAHRNEDVVNTRTNEASN
CAEDKTVPRHLEELQSKKNETMHTIKAKSYSLVQKKKEFSRIASFMGMNDLEFSKWLLSV
SPLQRHEVLDRYRNAK
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgtcgctccacagcctcaaagaaaccctccagtcttcctccttttcacagccccaatcc
gagtcccaaccccgatcacctcctcctctcctcgccaggaggcccccaaaaacgtccctc
tcgcagcagctcctccgccttgatgcctcctcctcctcttcctccttttccgtctcgccg
ccaccgccccctcgcacttccccgacctcggatgcggcggcggatgatgcgccgccgctg
ccagaggaggaggacgaggtcccctgcatccgcccccgcgcttcccttccgccagcggcc
tccctcgactcccgcgggccctacgaaccgcttgctctctcgccgcccggagagcgcccc
gtcgtccaggtaccctcctcgataaattgcaggctacttgtgcatcagagggatggtgta
agattcttatacaatctgtatagaaacaaccatggcggtgtgcttggagatgacatgggt
ttgggaaagactatccaaacaattgctttcttatcagctgttattggaaaagataatgac
cacggtgatcaattagtggaaggaagaaagattgcccctatactcatcctctgccccaca
tcagtaattcgaaactgggaaaatgaatttgcagagtgggcaagatgttctgttgctgtc
tatcatggcccaaatcgtgacctggttcttcaaaaggttgaaactcaaagactagagata
gttattaccagttttgacacttttaggattcatggcaagattttgtgtggcatctcgtgg
gaccttgtggttgttgatgaggcacaccggctgaagaatgaaaaatcaaagttatataca
gcttgcttggaaattactactcgaaagcggtttggtctcacaggaaccataatgcaaaat
aaaataatggaattatttaatctgtttgactggattgtacctggttgcttgggggatcga
gaacactttcgagtatattatgacgagcctttaaaacatggccagaggttcagtgctcct
gagagatttgtacaagttgctgataagcgcaagaagcaccttgtttcagttcttagcaaa
tttctgttgagaagaacaaaggaagagaccattgggcatctcatgcttggaaaggaggat
aatattgttttctgcagaatgagtgacgttcaaaagcgcgtttacagaagaatgctgcaa
cagcctgacgtgcaaatccttataaacaaggatctcccatgtagctgtggaagtcctttg
actcaggtggaatgctgcaagagaactgaaccacatggcattatctggtcttatcttcac
agagacaatccagagggttgttctctgtgccccttctgtcttgttcttccttgccttggg
aagcttcagcagatcagtaaccatctggagctgataaagccaaacctgaaagacgaaatt
gagaagcagaagaaagatgctgagcttgcagctgctgtctttgacacagatattgaatta
gttggtggaggtgctaaaagtgaaaacttcatgggtctcagtgatgcagaacattgtgga
aagatgcgtgcgttggaaagactattgtcattatggactctgcagggtgacaaaattctt
cttttcagctattcagtcaggatgcttgacatactagagaaatttcttatacggaagggt
tactgcttttctcgctttgatggaacgactcccatgaatgcacgccaattactaattgat
gagttcaatagatgcccaagcaaacaggttttccttatatctacacgggcaggaaattta
ggtgtcaacctggtcagtgctaatcgtgtggtgatttttgacccaagttggaaccctgcg
caagacttgcaagcgcaagacaggtcatttcgatttggacagaggcggcatgtcactgta
tttcgcctacttggtgctggttcccttgaagagcttatttattctcgacaaatatataag
caacagctttccaatattgcggtctctggaaaaatagaaaaacgttactttgaaggagtg
caggatgacaaaaaatttcaaggtgagctctttgggatatgcaatctgtttcgcgacttg
tctgataagcttttcaccagtgagatcattgaaatgcatggagaacatgggaagggtaat
acagctgaaacaataggaattcgagaaatagttgatacaaatatatttggtacgcaagat
caaatgaaatcctcaatgacagcaatacataacgagaacaagaatttgtaccattgtgga
atagtttatgctcaccgaaatgaagatgttgtaaacacgaggacaaatgaagcaagcaac
tgtgcagaagataaaactgtcccaaggcacttagaggagctgcaaagtaagaagaatgaa
acaatgcatacaattaaggcaaaatcttactcactggtgcagaaaaagaaggaattcagc
cgaattgcatctttcatgggtatgaacgaccttgagtttagtaagtggttgctgtctgtc
tcgcctttgcaacgacatgaagtattggaccgctacaggaatgcaaagtaa

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