KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4348965Help
Entry
4348965           CDS       T01015                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4348965
   03410 Base excision repair
    4348965
   03420 Nucleotide excision repair
    4348965
   03430 Mismatch repair
    4348965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4348965
   03400 DNA repair and recombination proteins [BR:osa03400]
    4348965
Enzymes [BR:osa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     4348965
    6.5.1.6  DNA ligase (ATP or NAD+)
     4348965
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     4348965
DNA replication proteins [BR:osa03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    4348965
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     4348965
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     4348965
   NER (nucleotide excision repair)
    Other NER factors
     4348965
   MMR (mismatch exicision repair)
    Other MMR factors
     4348965
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase eIF-3c_N TrmB
Motif
Other DBs
NCBI-GeneID: 4348965
NCBI-ProteinID: XP_015614473
LinkDB All DBs
Position
10
AA seq 916 aa AA seqDB search
MFLLRATATSTSTAASAAAASLLLRCHHPLSPPPRTLALALPARPPPALLLPSRFRLSSS
ASSSSRRRATGAASASAGAGAGKGKGKGGKSSGGKAAAAAAAGGAAMSASAGGGGGGGGK
RTVADVLMGNARDAARKAKKGAAPSPKKLKTQPQPAAEADGGAVAKPEEKPHSPVKPKRS
SSPTKSNSPGEGKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDTKSSAEGVEKEKRRSPS
PTKAKALASESQDIKKPSSPKKTKALDAPKSEEKDTTLELKKKGSEFNPMAAAYWSPEEP
VPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPEDLLATVYLSANRIAPPHEGTE
LGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKASRLSQKMMYKPKPLTISHVLA
KFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRLLQSKMRIGLAEKTVQMALGQA
AVYSEKHSPPSKIQSPFEEAAKIIKQVYSVLPIYDKIVPAILEVGVWKLPEICSFSIGVP
VGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCLEDGSVEIYSRNAERNTGKYP
DVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQILSTRARKGVTISDIKVSVCTFG
FDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLATSITSNDLEEIQKFLDTAVNSSC
EGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGSFL
LACYDEQNEEYQTICNIGTGFSEQQLEERSVSLRTKAIPKPKAYYRFADTMDPDVWFEPS
EVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDDKNPEQATTSEQVADMYRA
QKIYHANNNNDDEDDD
NT seq 2751 nt NT seq  +upstreamnt  +downstreamnt
atgttcctcctccgcgccaccgccacctccacctccaccgccgcctccgccgccgccgcc
tcgctcctcctccgatgccaccacccgctctccccgccgcctagaaccctagccctcgcc
ctccccgctcgccctccccccgccctcctcctcccctcccgcttccgcctctcctcctcc
gcgtcctcctcctcccgacgccgcgcgaccggtgccgcatccgcatccgcgggcgcgggc
gcggggaaggggaaggggaaggggggcaagtccagcggggggaaggcggcggccgcggcg
gcggcgggaggagcggccatgtcggcctcggcgggtgggggtggaggtgggggagggaag
cggacggtggcggatgtgctgatggggaacgcgcgggacgcggcgaggaaggcgaagaag
ggggcggcgccgtcgccgaagaagctgaagacgcagccccagcccgccgcggaggcggat
ggcggcgcggtggcgaagccggaggagaagccgcattcgccggtgaagcccaagcggtcg
tcctcgccgactaagtccaactcgccaggtgaggggaagaggtccgaatcggtggctgct
ggcgcgaaaccggaggcgaaggagaagccctcgccgaagaagcctaaaaccctaggtgcc
aaatccgacaccaagtcctccgcggaaggcgttgagaaggagaagaggaggtcaccatct
ccgacgaaggcaaaagcgctagcttctgaatcccaggacataaagaagccctcctcacct
aagaagaccaaagccttggatgcccccaagtctgaggaaaaggacaccaccctcgagctc
aagaagaagggcagtgaattcaatcccatggctgctgcttattggagccccgaggagccc
gtgccgttcctgttcctcgctcgggcacttgacctcatctctaatgagtctggaaggatt
gttatcacggagatcctatcgaatgtattccgcacggtgattgccacaacaccagaggat
ctcctcgcgacagtatacctctcagccaaccggattgcgccgcctcatgaagggactgaa
cttggaattggggatgcatcaattatccgtgcacttgcggaggcatacggccgcagagag
gagcatgtcaagaagaacctaaaggagttgggcgatttggggcttgttgcaaaagcaagc
aggttgtcacagaagatgatgtacaaaccgaaaccactgacgatctcacatgtacttgca
aaattccggacaattgcaaaggaatcaggcaaagatagtcaagataagaaaagaaatcat
atcaaaggacttctcgttgccgcaactgactgtgaacctcaatacattacacgactactt
cagtcgaagatgaggattgggttagcagaaaaaaccgtccagatggctcttgggcaagct
gctgtgtattctgaaaaacattctccaccgtcaaaaatccaatccccttttgaagaggct
gcaaaaataattaaacaagtatattcagttcttccaatatacgataaaattgtcccagct
attctagaagttggtgtttggaaacttccagagatatgcagtttttctattggtgttcct
gttggtcctatgttggcaaaagcaacaaagtctgtctcagagatcatagacaaatttcag
ggtcttgagtacacttgtgagtacaagtatgatggtgaacgggctcagatacattgcctg
gaagatggatcagtagagatctatagtcgtaatgctgagaggaacactgggaagtatcct
gatgttgttgatgcggtttctagattccggaagcctacagtcaaatcatttgtcttggac
tgtgaaattgttgcttatgaccgtgaaaagaagaaaatattaccttttcagatacttagc
acacgggcccgcaagggtgttaccataagtgatatcaaagtgtcagtctgtacttttggc
tttgatattctttacatcaatggcaagcctcttctccaggaacaactgaaagttcgacga
gagcatctttacaactcctttgaggaagtaccaggtgtttttcaattggcaacttcaatt
acatcaaatgacctcgaggagatacaaaaatttcttgacacagctgtcaactccagttgt
gaagggttgattatcaagacattggataaggatgctacatatgagccagcaaaacgatcg
aacaattggttgaaattgaagaaagactacatggacagcattggagactctttggatttg
gtgccaattgctgcctttcatgggagaggaaaacgtacaggtgtatatggatcattcctc
ctggcatgttacgatgagcagaacgaagaataccaaacaatctgcaacataggcactgga
ttttctgagcaacagcttgaggagcgttctgtgagccttcgaactaaagcaataccaaaa
ccaaaggcatactataggtttgctgacacaatggacccagatgtgtggtttgagccttca
gaggtttgggaggtgaaagctgctgatttgagcattagtcctgtgcatcgtgctgccaat
ggtatagttgatccgaacaagggcatctccctaagatttcctcgcttgttacgtgttcgt
gatgataaaaatccagaacaggcaaccacatctgagcaagttgctgatatgtaccgtgca
caaaagatataccatgcgaacaacaataacgatgatgaggatgatgactag

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