Oryza sativa japonica (Japanese rice) (RefSeq): 4349978
Help
Entry
4349978 CDS
T01015
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4349978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4349978
03400 DNA repair and recombination proteins [BR:
osa03400
]
4349978
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
4349978
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
4349978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
BRCT_3
RTT107_BRCT_5
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
4349978
NCBI-ProteinID:
XP_015616980
LinkDB
All DBs
Position
11:4614155..4623390
Genome browser
AA seq
979 aa
AA seq
DB search
MTPSHGAAAAAASSSAGAGRRAATFAGASVFLSRSLVAPEVYDAVHDALRLNGAEVFLCA
DPARTGPLDFHVISSSSHERFADLRAKGCNLLGPQCILSCAKEHRFLPKQGYTCCLAMDG
VKILCSGFEKDEKAKIEQLVTAMGGTLQNKAYTDANFVIAKDVLAAKYKWAVNTLKKPIV
SRNWLEQCWIEHRVVPHEPYRIPPFSGLNICITKLNVDERRELAKIIVQNGGQYSANLTR
RCTHLVSNEPGGDKYVVAQKWGNIHIVVPKWIDQSVARKVCLDESAYLVCQNSTNINGVK
HSLKEQHNPEISSASFQPVPTTSVDDSVSTSQYVPASFDDASKICSTDIGAPSFQETKEL
QVDSHVAEDSEAEDDDLYLSNCRISLVGFEEKESSRLVMMIRNGGGSRHVMLSERLTHII
LGAPSEEEKKEVRRLAAWGVINVVKATWLEDCNKAKKEVKVSPSYVANELLAKEFSCAVM
EKTVMRETKAAKNSGGIFHIPTVNDLHDKQLGNDLSSERKSARGKHETMNSNRTATKSAI
SSQQNGVASTSEYHPKFQVNSSAINRQSSRSSNTFKGRIFCFSNSFSHDRRAQVVDWVRE
GGGIMVDDAQSTVVDFIIESHGQNSMLRDSSHSTAVSTHWIRSCLEEGCFQDVGSHPIFS
PLCCRIPFPGFEDFRFCVSQYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICKFASGPK
YEAYYSRGIPTITAEWLFECVRQDRIVPFDQFQPKPPTSQDRDAGLCTVSQYPTQAAKTI
SRFDCSESHTESQLPRSSSKYNSAGNASVNEEPNDPGVSKRRRLSEFGKANDTSGNIGRT
EELQDSTPVPDVADAIEDLLVQSSKIQDVQPPRSIFAPDDSVLNQDQENTHSFGISRHWL
NMPQKLHSTPDTKVQSGNSATTSAAPPAAATAYYPFSETQTESQVVGYEEDLTGRQKIID
RVRSQSINVTPAAEMSSDT
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgtcgcacggcgccgcggctgcggcggcgtcgtcctccgccggcgccgggcgg
agggccgcgacattcgcgggggcgagcgtgttcctgtcgcggagcctggtggcacccgag
gtgtacgacgccgtgcacgacgcgctccgcctcaacggcgccgaggtcttcctctgcgcc
gaccccgcccggacggggccgctcgacttccacgtcatctcctcctcctcccacgagagg
ttcgcggatctgagagccaaaggctgcaatttactcggaccacagtgcattctttcctgt
gcgaaggaacaccgcttcctacctaagcaaggttatacttgttgtcttgcaatggatggg
gttaagatactttgctcaggttttgaaaaagatgagaaggcaaagattgaacaattagtg
acagctatgggaggtactttacaaaacaaagcatacacggatgctaactttgtaattgca
aaggatgtattggctgccaaatacaaatgggctgtgaatactctgaagaagcctattgtc
agcaggaactggttagagcaatgttggattgaacatcgtgttgtacctcatgaaccttac
agaatccctcctttttctgggttgaatatttgcatcaccaaactgaatgtagacgaacgg
agggagttggcaaaaataatagtgcagaatggtggccagtattcagcaaatcttacacgg
cggtgcactcatttagtttcaaatgaacctggaggtgacaagtatgttgtggcccaaaaa
tggggtaatatccacatagtagttcccaaatggatcgaccaatctgttgctcgaaaagtt
tgccttgatgaaagtgcataccttgtttgtcagaattccactaatattaatggtgtaaaa
cattcccttaaggaacaacacaaccctgagatcagtagtgcaagttttcaacctgttcca
acaacatctgtagatgactcagtatcaacgtcacagtatgtgcctgcttcatttgatgac
gcttcaaagatctgcagtactgatattggcgcacctagtttccaagagacaaaagaacta
caggttgatagccatgttgctgaggactcagaggcagaagatgatgacctttatttatca
aattgtagaatttctctggtgggttttgaggagaaagagtcgtcaaggttagtcatgatg
atacgcaatggtggtggatcccggcatgttatgttaagtgagagactcacacatattatt
cttggtgcaccatcagaggaagaaaaaaaggaggtgagacgtctggctgcttggggtgta
atcaatgtggtaaaagcaacatggttagaagactgcaacaaagcaaaaaaggaggtgaaa
gtatccccaagttatgtggctaatgagttgctcgcgaaagagttttcatgtgcggttatg
gaaaaaactgttatgcgggaaacaaaagcagccaaaaactcaggtggaatttttcatatt
ccaaccgtcaatgacttgcatgataaacaacttggaaacgatctgtcatctgaaagaaaa
tcagcacggggcaaacatgaaaccatgaatagtaaccggacagcaacgaagtctgcaata
tcaagtcaacagaatggagtggctagtactagcgagtaccaccccaaatttcaagtaaac
tcttctgcaataaatcggcagagtagcagatcatcaaatactttcaaagggagaatattt
tgtttctcaaattcattttcccacgatcggagagctcaggttgttgactgggtcagagaa
ggtggaggcattatggtggatgatgcacaatcaacagttgtggatttcattatcgagagc
cacggacagaatagcatgctccgcgactcttctcattcaactgctgtttccactcattgg
atacgctcatgtttggaggagggctgcttccaagatgtgggaagccatcctattttctca
cctttgtgctgtcgcatcccgtttcctgggtttgaagattttcgtttctgtgtgtcacaa
tatgaagagaaagatagacttctgctgaagaacttgtgctttatcctcggaagtaaattt
acagagaaagcaacaaagaaagtgacccatcttatctgcaaatttgcaagtggtccaaag
tatgaggcttactatagtaggggaattccaaccataacagcagagtggctctttgagtgt
gtaagacaggatagaattgtcccttttgaccagtttcagccaaaaccacctacttctcag
gacagagatgctggtctatgcactgttagtcaatatcccacacaggccgcaaagacaatt
tccagatttgactgctctgagtcgcatactgaatctcaattaccaagaagcagttcaaaa
tacaactccgcaggtaatgcctctgttaatgaggaaccaaatgatcctggtgttagtaaa
aggaggcgattatccgagtttggcaaagctaatgatacatctggaaacataggaagaact
gaggaactccaggatagtacccctgttcctgatgttgcagatgcaatagaggacctactg
gttcaatcatccaagattcaggacgtacaacctcctaggagtatttttgcacccgatgat
tctgttcttaatcaagatcaggaaaatacacactcttttggcatttcaaggcactggttg
aacatgccacagaagctacacagcacccctgacacgaaagttcaaagtgggaactcagcc
accacctctgctgcccctcctgccgcagccactgcctattatcctttcagtgaaactcag
actgagtctcaggtcgttggctatgaagaagatttgactggcaggcaaaagattatcgac
agagttcgttctcagagcattaatgtcaccccggcagctgaaatgtcttccgatacttag
DBGET
integrated database retrieval system
