Octadecabacter temperatus: OSB_20490
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Entry
OSB_20490 CDS
T04001
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
otm
Octadecabacter temperatus
Pathway
otm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSB_20490 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otm03019
]
OSB_20490 (rnjA)
Messenger RNA biogenesis [BR:
otm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OSB_20490 (rnjA)
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AKS46588
UniProt:
A0A0K0Y6I7
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Position
complement(2004997..2006649)
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AA seq
550 aa
AA seq
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MYLPLGGAGEIGMNCYVYGYGPADAERLIVVDLGVTFPDMDGTPGVDLILPDVSWLEERK
NQIEAIFITHGHEDHVGAVGHLYERLGAPIYARAFTANLARRKMSEHGYSDKTVKTVGKW
PETVKAGPFEVGFVPISHSIPESSGLVIDSKGGRIVHTGDFKIDVNPGIGEPFDHDLWES
LGKDGVKALVIDSTNVFSREEGRSESTVGPEIERFLKEATGMVAATTFASNVSRVRTIAQ
AADRAGRSVCLLGRSMRRMVEAATEVGILDDFPTVISPEDVGSMPRENVLLLVTGSQGER
RAASAQLANGKYMGLTMKEGDTFLFSSKTIPGNEKGVIHIMNQFSELGVDVVDDSSGGLY
HVSGHANRPDLDVMRDLIKPQTVIPMHGEHRHLREHVKVAETAGVQGVLAVNGMMIDLSG
NKPKVVEHIETGRMYLDGSVKVGQFDGVIRDRIRMALNGHVLVTLIIDENGDPLGDPWCE
VSGLSEMGRNNAPLVDVLEEDLSQFLGRADDKTIADDVRLEKELRTVTRKSAQGEIGKKP
EVTIVISRLA
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtatctccccctcggtggcgcgggcgagatcggtatgaattgttatgtctacggctat
ggccctgcggatgcagaacgcctgatcgtcgtggaccttggggtcacgttccccgatatg
gacggcacacctggcgtggatttgatcctgccagacgtaagctggcttgaagaacgcaag
aaccagattgaagcgatctttattacccacggccacgaagatcacgttggcgctgtcggg
cacctttacgaacgccttggcgcgccgatttatgcgcgtgcgttcacggccaaccttgca
cgccgcaagatgtccgaacacgggtattccgacaaaacggttaagaccgtcggcaagtgg
cctgaaaccgtgaaggcgggtccgtttgaagttggtttcgtgccaatctcacactctatc
cctgaaagctccggtcttgtgatcgacagcaagggcgggcgcattgttcacacaggcgat
ttcaaaatcgacgtgaaccccggtattggtgagccgttcgaccacgatctttgggaatcc
cttggcaaagacggcgttaaggcgctggtgatcgattccaccaatgtgttttcccgcgaa
gaggggcgctcggagtccactgtcggacctgagattgaacgtttcttgaaagaagccaca
ggcatggtagccgcgacaacattcgcgtctaacgtcagccgtgttcgcacgatcgcacag
gcggcggaccgtgcgggtcgttccgtgtgtttgttgggccgttccatgcgccgcatggtc
gaagccgcgactgaagtcggcattctggatgatttcccaacggtgatttcaccagaagac
gttggcagcatgccgcgtgaaaacgtgttgctgttggtcaccggatcgcagggcgagcgc
cgtgcagcgtccgcgcaattggcgaatggcaagtacatggggctgacgatgaaagagggc
gacacgttcctgttctcttccaaaaccattcctggaaacgagaagggcgtcatccatatt
atgaaccaattcagtgagttgggcgttgatgtcgtcgacgattccagtggcggactttac
cacgtttccggccacgcgaaccgtcctgatctggacgtcatgcgtgatcttatcaaacca
cagaccgtgatcccaatgcatggtgaacaccgtcacctgcgcgaacacgtcaaagtcgcg
gaaaccgctggcgtgcagggcgtgctggctgtgaacgggatgatgatcgatttatctggc
aacaaaccaaaggtggttgagcacatcgaaaccggccgcatgtatctggatggctccgta
aaggtcggccagtttgacggcgtgatccgcgaccgtatccgtatggcgctgaacggccat
gtgctggtgacgttgatcatcgatgaaaacggcgacccgcttggcgatccgtggtgcgaa
gtgtccggtctgtccgaaatgggccgcaacaacgcgcctttggtggacgtgttggaagaa
gacctgagccagttcttgggtcgtgctgacgacaagacgattgcggatgatgtgaggctt
gaaaaagagctgcgcaccgtaacccgcaaaagcgcccaaggtgagatcggtaaaaagcca
gaagtgacgattgtgatttcacgtctggcttaa
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