Oncorhynchus tshawytscha (Chinook salmon): 112220127
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Entry
112220127 CDS
T05605
Symbol
polm
Name
(RefSeq) DNA-directed DNA/RNA polymerase mu isoform X1
KO
K03513
DNA polymerase mu [EC:
2.7.7.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112220127 (polm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112220127 (polm)
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112220127 (polm)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
112220127 (polm)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_thumb
DNA_pol_lambd_f
DNA_pol_B_palm
HHH_8
NTP_transf_2
HHH_5
Motif
Other DBs
NCBI-GeneID:
112220127
NCBI-ProteinID:
XP_042158463
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All DBs
Position
LG20:complement(35019962..35045474)
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AA seq
563 aa
AA seq
DB search
MVPLKRRKVNCSVTSDSSGDRTSKFPGVVIYLLERKMGASRRAFLTRLGRGKGFNIEYSL
SCFITHIVSENNSGEEVRTWLDLQTGGQGGEGRTARPGSVHLLDIVWYTESMHAGIPVII
LDRHRLQEREKPGLELAVVSVPSYACQRHTPLLHHNITLTDALSILAENAELGENEGRGV
AFRRAAALLKSLPQEVRGAEQLRGLPCLGEHSLRVIKEVLEDGVSLEVETTTHSEQFKAM
KCVFQALTGIFGVGAKTADRWFREGIHTPSDLQRSGHTLNRAQRAGLQYYDELNLPVTKS
EAVAIGQIVERAVHAVLPGAEITLIGGFRRGKQTGHDVDFLITHPDEGREEGLMPKVVSW
LEAQGFLLYQKTTGNSYLESKEGPARPASNMDRFERCFSIFRLSTDNEGREIQTGREIQT
GREIQTGDGPQTYSPTLTNTDPHTHSDSPHPLPQTLVVVGDHAQKVSWVLGHSQCSGPRS
WRAVRVDLVVSPYSQFAFALLGWTGSKLFERELRRWAVHEKAMTLSSHALYDRKRTQYLR
ASSEEEIFAHLGLEYIPPCDRNA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggtccctctaaagcgcaggaaagtgaactgctccgttacaagcgacagcagcggtgac
aggaccagcaagtttcccggggttgtcatctatctcctggagagaaagatgggagccagt
cggagagccttcctcactcggctcggccgggggaaaggtttcaacatagaatactcctta
agctgtttcatcactcatatcgtgtccgagaataattctggggaggaagtccggacttgg
ctggacctccagactggaggacaggggggagaaggcaggacagcccgacctggttcagtc
catctcctggacatcgtttggtacacagagagcatgcatgctggcattcccgtgattata
ctggacagacacagactacaggagagagagaagcctggtttggagctggcagtggtctca
gtacccagctatgcctgtcagagacacacccctctactgcaccacaacataacactgacc
gatgcgttgtccatactggctgagaatgcggagctcggtgaaaacgagggacggggagtg
gcgttccgtagggcggcagccttgttaaagtccctcccccaggaggttagaggggcagag
caactacgaggactgccttgtctgggggagcactcactcagagtcatcaaggaggttctg
gaggatggtgtatctcttgaggtggagaccaccacgcattcagaacagtttaaggccatg
aagtgtgtgtttcaggccctaacaggtattttcggggtaggggcgaagacagcggaccgt
tggttcagggagggaatacacaccccctctgacctgcaaagatcaggacacacactcaac
agagcgcaacgagcaggtctgcagtattatgacgaactgaacctgcctgtcacgaaatca
gaggctgtagcaattggtcagattgtggagagggcggtccatgctgtgctcccgggggca
gagatcactctgattggaggattcaggagaggtaagcagactggtcatgatgtggacttc
ttgataacccatcccgacgagggcagagaggaggggctcatgcctaaggtggtgtcctgg
cttgaagcacagggcttcctgttgtaccagaagaccactgggaactcttatctggagagc
aaagagggtcctgcgaggccagcctctaacatggaccgctttgaaagatgcttctccatc
tttagactgagcacagacaacgaagggagggagatccagacggggagggagatccagacg
gggagggagatccagacgggggatggtccacagacatactcaccgacactgaccaataca
gatccacacacccactcagactctcctcacccacttccccagacccttgtggtggtgggt
gaccatgcccagaaggtgagctgggtgctgggtcattctcagtgctcaggtccccggtcc
tggagagcagtgagggtagacctggtggtctctccatacagccagtttgccttcgcattg
ctgggctggactggatcgaagttgtttgagagagagctgcgtcgctgggcagtacatgag
aaggccatgactctgagcagccatgctctgtacgacagaaaacggacgcagtatctaagg
gctagttcagaggaggagatctttgctcatctgggtctggaatatatccctccctgtgac
cggaacgcctga
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