Oncorhynchus tshawytscha (Chinook salmon): 112223652
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Entry
112223652 CDS
T05605
Symbol
raraa
Name
(RefSeq) retinoic acid receptor alpha-A isoform X1
KO
K08527
retinoic acid receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112223652 (raraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112223652 (raraa)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112223652 (raraa)
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
112223652 (raraa)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112223652
NCBI-ProteinID:
XP_024242517
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Position
LG24:14089378..14309596
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AA seq
493 aa
AA seq
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MMYESVDVVGLNPSPNPFLMMDYYNQSRGCLIPEKGLVPGVPHPYSSSIRNQHWNGSNHS
IETQSTSSEEIVPSPPSPPPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM
VYTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESPRSSSKGGMALGPQPPPPPLETG
RGQTGADRAAPPAVRNDRNKKKKDEKKPECTESYVLSTETEQMINRVSKAHKETFPSLCQ
LGKYTTSNSSERRVALDVNLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAA
CLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDA
ETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKIYVRKRRPHKPHMFPKMLMKITDL
RSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLESGATGSRTSGALPGSCSPSLSPS
SAQSSPSPTTQSP
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatgagagtgtggacgtcgtgggactgaatcccagcccgaacccgtttttaatg
atggattactacaaccagagcagaggatgtttgatcccggagaaaggacttgtgcctgga
gtgccccatccctacagctcgtccatcagaaaccaacactggaacggctcaaatcactct
atagagacgcagagtaccagctcagaggagatagtgccgagcccgccgtcaccccctcct
cccccgcgggtctacaagccctgctttgtgtgccaagacaagtcctcaggataccactat
ggagtcagcgcctgtgaaggctgcaagggcttctttcggaggagcatccagaagaacatg
gtgtacacgtgtcaccgggagaagaactgcatcatcaacaaggtcaccaggaaccgctgc
cagtactgccggctgcagaaatgcctggaagtgggcatgtccaaggagtctcctcgctcc
agctccaaaggcgggatggcgttgggcccccagccgccgcccccacccttggagaccggg
agaggacagactggggcggacagggcagctcccccggcggtgaggaacgaccggaacaag
aagaagaaggatgagaagaagccggagtgcactgagagctacgtgctgagcactgagacg
gagcagatgatcaacagggtcagcaaggcacataaggagaccttcccttccctctgccag
ctcggcaaatacactacgagtaacagctcggagcggcgtgtggctttggacgtgaacctg
tgggacaaattcagtgagctgtccaccaagtgtatcatcaagacagtggagttcgccaag
cagctgcccggcttcaccacgctcaccatcgctgaccagatcaccctgctcaaggccgcc
tgtctggacatactgattctgcggatctgcacgcgctacacaccggagcaggacaccatg
acgttctcagatggcctgacgctaaaccggacccagatgcacaatgccggcttcggaccg
ctcaccgacctggtgttcgccttcgccaaccagctcctccccctggagatggacgacgcc
gagacggggctgctcagcgccatctgtctgctgtgtggagatcggcaggacctggagcag
gcggacaaggtggacgtactacaggagcccctactggaggctctgaagatctacgtgagg
aagaggaggcctcacaaaccacacatgtttcccaagatgctgatgaagatcaccgacctg
aggagcatcagtgccaaaggagccgagcgtgtcatcaccctgaagatggagatcccgggc
tccatgccccctctcatccaggagatgctagagaattctgagggtctggagagtggggcc
acaggctcccggaccagtggggccctcccaggcagctgcagccccagcctatccccaagt
tccgcccaaagcagccccagccccaccacgcagtcaccgtag
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