Oncorhynchus tshawytscha (Chinook salmon): 112224715
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Entry
112224715 CDS
T05605
Name
(RefSeq) calpain-1 catalytic subunit isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04141
Protein processing in endoplasmic reticulum
otw04210
Apoptosis
otw04217
Necroptosis
otw04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112224715
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112224715
04217 Necroptosis
112224715
04218 Cellular senescence
112224715
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112224715
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
112224715
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C2: calpain family
112224715
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Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
ESX-1_EspG
EF-hand_7
Motif
Other DBs
NCBI-GeneID:
112224715
NCBI-ProteinID:
XP_042161752
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All DBs
Position
LG25:47218797..47260107
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AA seq
702 aa
AA seq
DB search
MSGGISASIATSRLRAEGMGSNDHAVPFLNQDYEALRQQCLETGCLFQDPSFLAEPPSLG
FKELAPYSAKTRDVEWMRPTELTDDPQFILGGATRTDICQGALGDCWLLAAIASLTLNER
LLHRVVPHGQSFQEDYAGIFHFQFWQFGEWVDVVIDDRLPTKNGELMFVHSAEGNEFWSA
LLEKAYSKLNGSYEALSGGSTTEGFEDFTGGVSEMYDLRKAPRDLYRIISKALDRGSLLG
CSIDITSAFDMESVTFKKLVKGHAYSVTGLKQVDYQGQVERLIRVRNPWGQVEWTGAWSD
NSPEWDELDPTEREDLHLQMEDGEFWMSFQEFLRQFSRLEICNLTADALSEDGLSHWNTI
KFHGMWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDDEVACSFLVALMQKDRRRY
RGQGQDMHTIGFAIYEIPEEYRGCQNVHLKKDFFLTHSSCARSETFINLREVSNRLSLPP
GEYLIVPSTFESGQEADFVLRVFTEKQSETEELDDIISADLEDEDLISEDDVDDAFRSMF
AQLAGEDMEISVRELRTILNRVVTRHKDLKTDGFSMESCRTMVNLMDKDGSARLGLIEFQ
ILWNKIRKWLVIYREYDMDKSGSMSSYEMRLAVESAGFKLNNRLNQVLVARYAENEAIDF
DNFICCLVKLEAMFRSFQQLDKEGEGVAEMNITEWLYMTMCG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggggaatctctgctagcatagccaccagcaggctacgagccgagggaatgggc
tccaacgaccacgccgtacccttccttaaccaggactacgaggctctgaggcagcagtgt
ctggagacggggtgtctgttccaggacccctccttcctagctgaacctccctctctgggc
ttcaaggaactggccccctactctgccaagaccagggacgtggaatggatgagacccacg
gagctgacagatgaccctcagttcatcctgggaggagctaccagaacagacatctgccag
ggagcgctgggtgattgctggctcctagcagccatagcctcactaacccttaatgagagg
ctgctccaccgagtggtccctcatggtcagtccttccaagaggactacgctgggatcttc
cactttcagttctggcagtttggtgagtgggtggacgtggtgattgacgaccggctgcca
acgaagaatggagagctcatgtttgtccactcggccgagggcaatgagttctggagcgcc
ctgctggagaaggcctactccaagctgaatggttcctacgaggctctgtctggaggcagc
accacagaaggttttgaggacttcaccggtggtgtctctgagatgtacgatctccggaag
gctccacgggacctgtacaggatcatcagcaaagccctggacagaggctcattgctgggc
tgctccatcgacataaccagtgcctttgacatggagtcggtcacgttcaagaagctggtg
aaaggacatgcttactcagtcaccggcctgaagcaagtggactaccagggtcaggtggag
aggctgatcagggtgaggaacccctggggacaggtggagtggactggggcctggagcgac
aattctcctgagtgggatgagttggatccaactgagagagaggacctgcatctacagatg
gaggatggagagttctggatgtcgttccaggagttcctgaggcagttttcccgtctggag
atctgcaacctgacggcggacgctctgagtgaggacggcctcagccactggaacaccatc
aagttccacggcatgtggagacgggggagtaccgccgggggctgccgcaaccaccccaac
acgttctggatcaacccccagtataagatcactctgctagaggaggacgacgaccctgag
gatgacgaggtggcctgtagcttcctggtggctctgatgcagaaggataggaggaggtac
cggggacagggacaggacatgcacaccatcgggttcgccatctacgagattccagaagag
tacaggggctgtcagaacgtgcacctaaagaaggacttcttcctgacccactcatcctgc
gctcgctcggagaccttcatcaacctgagagaggtcagcaaccgtctcagtctgcctcca
ggagaatacctcatcgtcccctccaccttcgagtctggccaggaggccgactttgtcctc
cgagtcttcactgagaaacagtccgagacagaagagcttgatgacatcatatctgcagat
ctggaagatgaggacctcatcagtgaagatgacgtcgatgacgctttcagatccatgttt
gctcagcttgcaggagaggacatggagatatctgtccgtgagctcaggaccatcctgaac
agggtggtgactagacacaaagacctgaagacagacggtttcagtatggagtcctgtagg
accatggtcaatctcatggataaagatggcagtgcccgtctcggcctgatagaattccaa
atcctctggaataagatcaggaagtggctggtcatctatagagaatatgatatggacaag
tcaggatccatgagctcctatgagatgcgacttgctgtggagtcggcaggttttaaactg
aacaacaggctgaatcaggtcctggtggctcgctatgctgagaacgaggccatagacttt
gacaacttcatctgctgtctggtgaaactagaagccatgtttagatctttccagcaacta
gacaaagagggagaaggtgtggctgagatgaacatcactgagtggctttatatgaccatg
tgtggttga
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