Oncorhynchus tshawytscha (Chinook salmon): 112226812
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Entry
112226812 CDS
T05605
Symbol
spidr
Name
(RefSeq) DNA repair-scaffolding protein isoform X1
KO
K22806
DNA repair-scaffolding protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112226812 (spidr)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112226812 (spidr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4503
DUF4502
Motif
Other DBs
NCBI-GeneID:
112226812
NCBI-ProteinID:
XP_024247154
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All DBs
Position
LG28:complement(15579129..15663973)
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AA seq
989 aa
AA seq
DB search
MPFQGKRKRYSKDIQCMFFPDVKVSVRKVGRGPSITDSSATKSWESCGDSFLDTPVIKNL
SSSGNKWRAVRRLAQSPAQVQCSGLRCDEDPVHIAWSSSESEPSDSEPQGQQPPPTPPSS
IVAQVHRGPGRQGASIQFYSRAQRMLSTETDELPTIDTDSDVDEAEDDQGKKEDGVGEIS
DCESEPCAREPKESSPKPTTVTDTDISDYLSDGEEESHDTLSLNRLEAGVVAECPLQAGE
GEGSRRSVSDWVRSAQAALQTPQKQTDRNSKTPEDSSKKKRTFQSGGMAERLNRLQCRQR
SAISFWRHQSISHTSTTATVDKPGVLVLEVLSVQEESCMQLALCEQHHPPATGHHRPPSN
TTTTMTRPEQHNPSATDHTPPLSTRNGARVLVLFSKETTAQLMPVPRDLIHIYPPWQSLM
IEGQHNSIILNTHFSQKVYSDTKQTSMSLPRALVPVERCNPYSLTRSFGQLEINKTSPEG
DGTVKQSLCSQGGPGAASSGGCHSLLEAIEGLGQAGSVGQDVEVVVQRVYCTPIRERSTG
ASLKSRAPGRSPRVPPPLQKGKSRLCVLVQDGYGMFSMVQLHPLPSEDPLHLYTRKWEGR
TCVLRAIKVVQRVTRERWTRLFSLIDSLWPPVMPFKVLGENQSCQGDSRHKGPAPSFCYL
LSGQEGSVEPVEGQPLSSLYLPPTEQTLRDILQCELNSHRCSFVATVIYKRTQSQSSDQS
PGEVWLVVTDPSLQEEQQSDGPPCRRTLAVCVTTSCVLTSSVAKAISTPGTFRLSFRDAV
REHGGILCVEQSVVQLRPLVSVCCPHTESTLGPGSLSLSQAKPLPQPLPQSQPNVLPQAL
PQHVTLDPLGPETPPNSLCTFSGVIVGVDEDTAYSWPVCSLCGSDRLEMAPQKPQAFLCV
ACDSLVDQPTMNMQLEVFMNCSTLRDFTVKVKLQQSTIMSVLNCAASGHEFPGYEVENVL
GKEVGLLSAYVRVLTRKPALSIGLEEICL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcaaggaaagcgcaaaagatattccaaggacatacagtgtatgttctttcct
gatgtcaaagttagtgtcagaaaagtgggacgagggccttcaatcactgacagttctgct
accaagtcctgggagagttgtggagacagctttttggacactcctgtgataaagaaccta
agttcatctgggaacaaatggcgagctgtacgacgactggcacagtcaccggcacaagtg
cagtgcagtggtctgcggtgtgatgaggacccagtgcacatcgcctggagctccagtgag
agtgagccttctgacagtgagccccaaggccagcagcctcctccaactccccccagcagc
attgtggctcaggtgcaccgcgggcccgggagacaaggagcctccatccagttctacagc
cgagcccagcgcatgctcagcactgaaacagatgagcttccgacgatagacacggatagt
gatgtggatgaggctgaagatgatcagggaaagaaggaggacggtgtgggggagatctct
gactgtgagtcggagccctgcgctcgggaaccgaaagaatcatctcctaaacctacaact
gtgacagacactgacatctcagactacctgtctgatggagaggaagagagccatgacacc
ctgagcctgaacagactggaggctggggttgtggctgaatgtcctctgcaggctggggaa
ggggagggcagcagaaggtcagtcagtgactgggtcaggtccgctcaggcagcgctgcag
acgccccagaaacagacagacaggaactccaagaccccagaggactccagcaaaaagaaa
aggacgtttcaaagtggcggcatggcggagcgactgaaccgactccagtgcagacagagg
tcagccatcagcttctggaggcaccagtccatctctcacacttctactacagccacagtc
gataagcctggggtgctggtactggaggtcctgtcagtccaggaggagagctgcatgcag
ctggccctgtgtgagcaacaccacccccctgctacaggccaccacaggcctccatccaac
accaccaccactatgacaagacctgaacagcacaatccctctgctacagaccacaccccc
cccctctccaccagaaacggagctcgggtcctggtactgttcagtaaggagacgactgct
cagctcatgcctgtgcctcgagacctcatccatatatacccaccatggcaaagtctcatg
attgagggccaacataatagcattattctcaacacacacttcagccagaaggtatactct
gacaccaagcaaaccagcatgtccctccccagagccctggtcccagtggagagatgcaac
ccatactctctgaccaggtcatttggccagcttgagatcaacaagacttcaccagaggga
gatggcacggtcaaacagtctttatgcagccagggtggcccaggtgcagccagcagcgga
gggtgtcattcgctcctagaggccatcgagggcctgggccaggctgggtcagtggggcag
gatgtggaggtggtggtccagagggtctactgtacccccatcagggagcgctccactggg
gcttcactcaagtccagagctcctggccgatcccctagagtgccgcctcctctccagaag
ggcaagagcaggctgtgtgtgctggtccaggacggctatgggatgttcagcatggttcag
ctccaccctctgccgtctgaggaccctctccacctctacaccaggaagtgggagggccgg
acctgcgtcctgcgagccatcaaagtggtgcagcgggtcactcgggaaaggtggaccaga
ctcttcagcctgatagacagcctctggccaccagtgatgcctttcaaagtacttggagaa
aaccagagctgtcaaggtgacagcagacacaaaggcccagccccaagcttctgttacctg
ctgtcaggccaagagggctctgtggagcctgtagagggacagcctttatcctctctatac
ctgcctcctacagaacaaaccctcagagacatactgcagtgtgagctcaacagccatcgt
tgtagctttgtcgccactgtcatctacaagagaacgcagtctcagagtagtgatcagagc
ccaggggaggtttggctggtggtgactgaccccagtttgcaggaggagcagcagtccgat
gggccaccatgcagacgaacgctggctgtgtgtgtgaccacttcctgtgtgctcacttcc
tctgtcgccaaggcaataagcacccccggcaccttccgcttgtcattcagggacgcagtc
agagagcatggtgggatcctgtgtgtggagcagtcagttgtgcagctgcggcctctggta
tcagtgtgctgcccacataccgagagcacgctgggcccagggtctctgtcattgtcccag
gcaaagcccttacctcagcccctacctcaatcccagcccaatgtccttcctcaggcttta
ccacaacatgtgacgctggatcccctgggtccggaaacaccacccaactccctctgcaca
ttctcgggtgtgatagttggtgtggatgaggacacggcctactcctggccagtctgcagc
ctgtgtgggagcgaccgcttggagatggcaccccaaaagcctcaagcattcctttgtgtt
gcttgtgattcactggttgaccaaccaaccatgaacatgcagcttgaagtgttcatgaat
tgttctacactgagagacttcactgtgaaagtaaagctccagcagagcaccatcatgtct
gtgttgaactgtgcagcctctggccatgagttcccaggttacgaggtggaaaatgtgttg
gggaaggaggtgggcctcctcagcgcttacgtccgcgtgctcaccaggaaacctgccctg
tcgatcggcctggaagagatctgcctctga
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