Oncorhynchus tshawytscha (Chinook salmon): 112226975
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Entry
112226975 CDS
T05605
Name
(RefSeq) deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112226975
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112226975
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112226975
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C64
112226975
Ubiquitin system [BR:
otw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
112226975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
112226975
NCBI-ProteinID:
XP_024247477
LinkDB
All DBs
Position
LG28:complement(24911481..24918775)
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AA seq
1188 aa
AA seq
DB search
MSLLQGSKKKDKRILSGTCPDPKCQARLFFPAYGSISIECTECGQRHEQNNLLNVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EMNQGEMFDCSLLGDRAFLIEHEHVSTVGYGKDRSGSLIYLHDTLEEIKKANSNKECIIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQNFKQNLDRYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVPEE
QCKGKDGKFNKPICIAWSSSGRNHYIPLVGIKNTLLPKLPPRLLPKAWGVPQELIKKYIN
LEQDGSCVIAGDRSLQDKYVMRLVNAMEEIFMEKHGIHPSLVADVHQYVYRRTGMIGVQP
EEVTEAARKSVMENRLHRCLICNALSELHVLPEWLAPGGKLYNLAKSTHGQLRPDKNYSF
PLNNVVCSYDPEKDILIPDYKLSTLNTCNWCHGTSVRHIHGNGSVVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYEVEVTLNSNVYDVAMKLV
TKHFPGEFGSELLVQKVVNTILHHTAKKNPDEYNPVSIDGAHAQRLTDVVEIQQAIDTQP
PTKIILTGQKSKTIHKEELTMSKAERSLQQSISEQALVTQKRRTDRLKQEQKGVQGHGRP
SSPSATQEPSSSAPATPTKSSFTSSKEKKIRVTTSDGRQAMLTLQAQTTFSELQRSIANE
FIVSPAQQCIRHGFPPKELLPPKDGEENEPVALQHGDRVTVEILRGPEDHKVSTPSASSS
HSSLHSLHSVKSDDTVTSSRMNTSRELQENIDLEMSSLCLLATLMGEDVWSYAKKLPHLF
QQGGVFFNIVKKDMGLMDGKHCTLPHLTGKTFVYNAAEECLELCVDAAGHFPVGPDVEDL
VKEALVQLRSEAASRSREGSPSHSLLRLGSGGVVRKKEQLQSVNAFQGKGHSLGSAPGGS
PPEHKPITRQHSSGVDLSASVSKGPDLSDISEDATKELVRMAPGFVTMKDSRHLDPSMIE
EQRKKLQEMVSSIQASMDRHLREQSNAGAGTGGPAERTSGAKMSASQSTPGVGEQEASSM
DVSTAGAHGTPVKAGNKPDGKDAGSEELEEMDSQDAEHTNALEPMDHS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgctacaaggctcaaagaaaaaggacaagcgtattttgtccggtacctgccca
gacccgaaatgccaggcgaggctattcttccctgcttacggctcgatcagcattgaatgc
actgaatgtggccaacgccacgaacagaataatcttttaaacgtggaagaagtaactgat
ccagacgttgtactgcacaatttgttaagaaatgccctactcggtgtcactggagcccca
aagaagggaaccgagctggtgaaagtgatggggctttccaactaccattgcaagctcctc
tctcctattctcacaaggtatggaatggataagcagacgggaaaagcgaaactgctgagg
gaaatgaatcaaggagagatgttcgactgctcacttctaggtgatcgggcgtttctaatc
gaacatgagcatgtatctacagttggctatggcaaggacagatccgggagcctgatatac
ctccacgacactttggaggagattaagaaagctaacagcaacaaagaatgcataatacct
gttcatgtggatggagatggacattgccttgttcatgctgtgtccagggccctggtaggc
agagaactgttctggcatgccttaagagagaatttgaaacagaatttcaagcaaaatctg
gatcgctacaaggcactctttcaggattttattgatgcagctgaatgggaagacatcatc
aacgaatgtgaccccctttttatcccaccggagggtgtgccactgggacttcgaaacatt
cacatatttggcttggctaatgtgctgcaccgccccataatcttgttagattcactgagt
ggaatgaggagctctggggattactctgcaacttttctccctgggcttgtaccggaagag
cagtgcaagggaaaagatgggaagttcaacaagcctatatgtatcgcctggagtagctct
gggcgtaaccactacatccctcttgtcggaataaaaaacaccctcctccccaagctgccg
cccaggcttctccccaaagcttggggggtcccacaggagctcatcaagaagtacattaat
ttggaacaagacgggagctgcgtcatcgcgggagaccggagcttacaagacaagtatgtg
atgagactggtcaatgccatggaggagatcttcatggagaagcatggaatccacccctcc
ctggtggcagacgtgcatcagtacgtttacagacggaccggtatgatcggcgtccaaccc
gaagaggtgactgaggctgccaggaaatcagtcatggaaaaccggcttcatcgctgtctg
atctgcaatgcactctctgagcttcatgttctacctgagtggctggctccaggtggtaag
ctctacaacctggctaaatccacccacgggcagctcagacccgacaagaactacagcttt
ccgttgaacaatgtggtctgctcttatgacccagagaaagacatcctcattcctgactac
aaactaagcaccttgaacacctgcaactggtgccacggcacctcagtgcgccacatccat
ggcaacggctctgtggtgtacttagatggagaccgaaccaacacccgctcccagggggga
aagtgcggctgcggcttcaaacactactgggagggaaaggagtatgacaatctgccagag
gctttccccatcactctggagtggggtgggcgtgtcgtgcgggagacagtgtactggttc
cagtatgaggttgaggtgaccctgaacagcaacgtctatgatgttgccatgaaactggtt
accaagcatttccctggggagtttgggagtgagctcctagtgcagaaagtggtgaacacc
attttgcatcacactgccaagaagaacccagatgagtataacccagtctccattgatggt
gcgcatgctcagagactcacagacgtggtggaaatccagcaggccattgacacacagcca
ccgactaagatcatactaactgggcagaaatcaaagaccattcacaaagaggagttgacc
atgagtaaagcagagcggagccttcagcagagcatcagcgaacaggccctagtgacccag
aaaaggaggacagatcgactgaagcaggagcagaagggagtccagggacatgggcggccg
tcctctccgagtgctactcaggaaccttcctcatccgctccagccacgcccaccaaatct
tccttcacttccagcaaggagaagaagatccgtgtcaccactagcgacgggcggcaggcc
atgctcactctacaggctcaaaccaccttttctgagctccagaggagcattgcgaacgag
ttcattgtgtctccagcccagcaatgtattcgacatgggtttccccccaaagaactttta
cctcccaaggatggagaggagaatgagcctgtggctctccaacatggggacagggtgact
gtggagatcctgagaggtccagaggatcacaaggtttccaccccaagtgcttccagttcc
cattcatccctgcattccctccactctgtgaagagtgatgatacagtgacttccagcaga
atgaatactagcagagagctgcaggagaacattgaccttgagatgtcctccctctgtctc
ctagcaaccttaatgggagaagatgtctggtcatatgcaaaaaaactgcctcacttattc
cagcaaggtggagttttcttcaacattgtgaagaaagatatgggcctgatggatggcaag
cactgcaccctcccacacttgactggaaagacgtttgtgtacaacgcagcagaggagtgt
ctggagctgtgtgtggatgcagcgggacacttccccgtgggccctgacgtggaggacctt
gtcaaggaggccctggtgcagctccgctctgaggctgcctccaggagtcgggagggaagc
ccctctcacagcctgctgaggctcggaagtggaggtgtggtgcgcaagaaggagcagctc
cagagtgtcaacgccttccaaggtaagggccactccctgggcagcgccccaggcggctct
ccccctgaacacaagcccatcacccgccagcacagcagcggggtggacctgagcgccagc
gtctcaaagggacctgacctctctgacatctcagaagatgcaaccaaggagctggtgcgc
atggctcctggtttcgtcaccatgaaagacagccgacacctagaccctagtatgatcgaa
gaacagaggaaaaaactacaggagatggtctcatccatccaagcctccatggacaggcac
ctgagggagcagagcaatgcaggggcaggcactgggggccctgcagagaggacaagtggg
gctaagatgagtgcttcccaatctaccccaggggtaggtgaacaggaagcctcttctatg
gacgtatctactgctggtgctcatggcacaccagtgaaggcagggaacaagcctgatgga
aaggatgcagggtcagaggagctggaggaaatggatagccaggatgcagagcataccaac
gccctggagccgatggatcattcctga
DBGET
integrated database retrieval system