Oncorhynchus tshawytscha (Chinook salmon): 112235641
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Entry
112235641 CDS
T05605
Name
(RefSeq) poly(A) polymerase type 3 isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112235641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112235641
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
112235641
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
112235641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
DUF6431
Motif
Other DBs
NCBI-GeneID:
112235641
NCBI-ProteinID:
XP_042175095
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MPFPSTNQVLLGRETPKHYGITSPISLAQAKEADLVLTHRLTEALKPYGVFEEELELQRR
IHVLGKLNTLVKEWIRDVSETKNLPASVIETVGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVERTDFFSSFLDKLKEQEEVKDLRAVEEAFVPVIKLSFDSIEIDILFARLALQTIPEN
LDLRDDGLLKNLDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRTIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAVASTLVHKFFLVFSKWEWPNPVLLKQPEDCNLNLPVWD
PRVMLIIMLNLPVWDPRVMLIIMLNLPVWDPRVTPSDRYHLMPIITPAYPQQNSTYNVSA
STRAVMVDEFKQGLAITDEILQSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQHLEWV
GLVESKIRILVGNLEKNEYITLAHVNPQSFPGPRESREKEEVSTMWVIGVIFKKMEASEN
LNVDLTIDIQSFTDTVYRQAMNSKMFEADMKIQAMHVKRRQLHQLLPDLVMPKRRKHSTE
GLRQMNDSSLDLSLDSDNSMSVPSPTAMPATVPTSTPVKCGPLGPLAAAAGQPEAPAVKR
PGSPMQEERKRFKSDAEDSAVEKKPSGDTVPTSLTPSPPPTMGPPAAPRTSRQEMLEEED
PSPVPENGAAGGEECTTVEAQVNEDSMSEEMPASEGEGKMEADIKRMVSADLSDVPLLPA
NPIPVVKNSIKLRLSR
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgccctttccgtctacaaaccaggtgttgttgggtcgggaaacacccaagcactatggg
atcacttctcctatcagcctggcccaagccaaggaggctgacctggtcctcacacacagg
ctgactgaggccctgaaaccatacggggtgtttgaagaggagctggaactacagcgcaga
atacatgtgttgggaaaactgaacacactggtgaaggaatggatccgtgacgtcagtgag
acaaagaatctgcctgcctcagtgattgaaacggttggagggaagatcttcacatttggg
tcctacaggttaggagtccacactaaaggtgctgacattgatgccctgtgtgtggctcct
cggcatgtggagagaacagacttcttctcctcgttcctggacaagctgaaggagcaggag
gaggtcaaagatttgagggctgttgaggaggcatttgtccctgtgataaagctgtctttt
gacagcattgagatcgatatcctgtttgctcggttagcgttgcaaaccatcccagagaat
ctggacctccgagatgacgggctgctgaagaaccttgacatccgctgcattaggagtctt
aatggttgtagagttacagatgaaatcctccatcttgtgcccaacattgagaacttcaga
ctgacactgaggaccatcaagctgtgggctaaacgtcataacatctacagtaatatcctg
ggcttcctgggtggtgtctcctgggccatgctggtagccaggacctgccagctctacccc
aacgccgtggcctccaccctcgtacacaagttcttcctcgtcttctccaaatgggaatgg
cccaaccctgttctcctgaagcagccagaggactgcaacctgaacctgccagtctgggac
cccagggtaatgctgatcataatgttgaacctgccagtctgggaccccagggtaatgttg
atcataatgttgaacctgccagtctgggaccccagggtgacccccagtgaccggtaccac
ctgatgcccatcatcacaccagcctacccccagcagaactctacctacaacgtctctgcc
tctacgcgtgccgtcatggtggacgagttcaaacagggtctggccatcacagatgaaatt
ttgcagagtaaagcagagtggtccaaactatttgaagcaccaaacttctttcagaaatac
aagcattatattgtgttgctagcaagcgcccccaccgagaagcagcacctggagtgggtt
ggtctggttgagtctaagatcaggatcttagtaggaaacctggagaagaatgagtacata
acgttggcccatgtcaacccccagtcattccctggacccagggaaagcagggagaaagag
gaggtcagcaccatgtgggtgataggtgttatctttaagaagatggaggcatcagagaac
ctcaacgttgacctgaccattgacatccagtcctttactgacacggtgtaccggcaggcg
atgaacagcaagatgtttgaggcggacatgaagatccaggccatgcatgtgaagaggaga
caacttcaccagctactgcccgacctggtcatgcccaaacgcaggaagcactcgacagag
gggcttcgtcagatgaatgacagtagtctggacctatcgttagacagtgacaacagtatg
tctgtgccatcccccacggccatgccagccactgtgcccacgtcaaccccagtgaagtgt
ggcccactaggtccccttgcggctgcagccggccagcctgaggccccagctgtgaagaga
cctggctcccctatgcaggaagagaggaagcggttcaaatcagatgctgaggattcagct
gttgagaaaaagccttcaggagacacagtccccacaagcctgaccccctctcctccgccc
accatgggccccccagcggccccccgcacctctcgccaggagatgctggaggaggaggac
ccctccccagtcccagagaatggggcagctggcggagaggagtgcaccactgtggaggca
caggtcaatgaggacagtatgtccgaggagatgcctgcttctgaaggggaaggcaagatg
gaggcagatattaagcgaatggtcagtgcggatctgtctgatgtgcctctcctgccagcc
aacccaattccagtggtgaagaactctataaagcttcgcctcagcaggtag
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