Oncorhynchus tshawytscha (Chinook salmon): 112237324
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Entry
112237324 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protein Shroom3
KO
K18625
protein Shroom
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112237324
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
112237324
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ASD2
ASD1
PDZ
Motif
Other DBs
NCBI-GeneID:
112237324
NCBI-ProteinID:
XP_042158654
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All DBs
Position
LG20:44996150..45120111
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AA seq
2109 aa
AA seq
DB search
MDSSLPSYSTVIHRGKTLFLEARLLGGAPWGFQLKGGLEHGEELIVSKVEGGGKADLLEH
PLLPGDQVVVINDVELSGFRQEAISLVKGSYKTLRLTVRRESFPGPCCDEPTPLTLPSIA
PPLDHLAPPSSHGPPKETRGGCSGGVKLRIKNRRSEPVSRPHSWHSTKLGEGQPDPSMVQ
ISQGTIDPPWHHTFNSSASTTDLSGYDPGYLRKSPDQYSSRGSMESLGEHHGHPAYSSSC
HQLSASKSSNSMDHLHSKRDSAYSSFSTSSSIPEYLAATPTFSKERSYSMETVPQRGGVS
GGGGGAVAEGMQHADIRYIRTVYDPQQGGAQEHEVSSAALLRNHEAGRAGSHSGGKASCH
RGSSSCSNSSGGSNDGNNPKRHSVGPIWGQSQSASRSPYESLKGAPAPPMRSDSYAAIRH
HERPNSWSSLEQTRSLRALHKGSTSSWYHSSGSVASGSGKGSYGAEGQLHTVIEKSPESS
PTIKPKQGVGQVPHPPQPQNTSGRLMSPQGIYPVPPSETHYAQMPTSSPSPSSVYPGLAR
ESSLSRQRELQGLGVGVSVDTGIEVYVENGYQSNTFNSYVTCSNQPQHHDLAPPPTKQPA
QPVNRGGDRGHEETQTKLGLSGSHLKGEGQTVSRRQSQQGHGQGQVYRPSSAQSIGQERR
DPYTPVQPRRERLPRYSQGSESYTEKHQVRHTEHSHPDPQPPTTMPTKISKVHVPQRIRT
SSTPAKGPDHRVNNQRSRSPIRHYSDPSPSHHQKNQRGPEHPLTRLENALAEVQHCASPE
SSTRSRSSHQRNPSVLEKVNRFERHEQRKQRSQSINATHTNLAPSSSRPTQPQPQPKHHE
RAMSYGTGMDDLRNMLERSSSPSSTCRTLSSTSSAHHGKTTVAHKGHHYAEQQRPASYDQ
AKPQTSRDPHHQLNPMDPNPGSALQRSRSTFQLGSQEENGHDRDREFHWRDDLQDLLGTI
QDTSFNRAYRDSVKDAQSKVLRSTSFRRRDLGISSSSNQSSNNPPPGVNNNPLLVSTTTP
SWCQQQPPLSPLSTYPWSRRQWPPRPVPNPPLSPPLPQPLPCPLTPPKERHTITTPDPVP
APTTSPSPHTPKERHTITTPDPVPAPTTSPSPHIPKERHVVTPKPERFSPPELPSVPALG
PPVPARIGGRKRLTMEQKKRSYSEPESMHEVGLESDPRRSAQHQQILFQGTETSVADRRR
MFEVATSRSLSSSSQAPQALQGSRAGLAVSRPELWQLQQDALADYMERKRGWRTDRDRSE
ERRHRHRPHSAYLQPFTDTQSVSSTSTTSLASLQDLFGPDSSLSGEERLCSTLPPGLQLQ
DSIHPGRVTTPHIIHAQAPTSVSTSHQYPTGFGSNRPLEGVPAKAYEAFRSQRGDVAFER
TAPARSSGKSASAEDLLEHSEERPAPQHFRSHSSPSVERLNQDFMTGGDLRMFPDFSNEP
RLFTHHDNNRSMDKQRLKRPVSASQSQYVPTHYLLNQGPSQSNTPVMRRERQRNPDRQRA
LSASGLAASVGLPCPFSSPGTSPNTSLDWQVSESQGNLDAIAFPCLLQVDAPRAVSPETR
RSTTAHQGQNQDLQTRTRLGSSDTSTSEETLKDFPIESSIPKNILPLDIPETSLTPPPPK
TSPRPHPLLSLRISESNLQETPPLHIAPPTQVVPPIVSLQDYDEVFLQELAPPSPPPPPL
PIRETDITEDFPPPPPLLLLPSSSSPPDKEEHRPELQHFNSCEFLEAVCPERRPSISSPS
PQTVPLSIPQPETPTHQTPIDPSSSIPDPQQGPSGKESLGLEYHLLARRERSAGELKVEA
LVRQLVSRGDKTLSPMLDTWPGGGRTSTMDLMEEIFPAGGGRLPWQRRRSSTWLEDRSQD
GVCSTGPSLLQKTEPGRGIDLDEEEADLNQKKVELLQALTLSVASLREEREVLGEEQRRF
RALGGHMESLVQERCKPNEKEKYRMFIGDLDKIVNLLMSLCGRLARVHNALYDLDREEET
EDSAEERESLQQKRRQLCSQHEDARELKENLDRRERVVLNILGGYLTGPQLRDYQHYVCM
KPALLIRQRHLDELIKQGDEQLDRLIESISPGDHQALLCCSSNPGLGPRGPSPNLGPTHN
VRSITVTSL
NT seq
6330 nt
NT seq
+upstream
nt +downstream
nt
atggatagcagtctccccagctacagtacagtcatacaccgaggaaagacgctgtttctg
gaggctcgactcctgggtggggcgccctgggggtttcagctcaaaggaggtcttgaacat
ggagaagagttgatcgtttcgaaggttgagggaggtgggaaggcggacctgttggaacac
cccctgttgccaggtgaccaggtggttgtcattaacgacgtggagctcagtggattcagg
caggaagccatctcattggtcaaaggatcctacaagactcttcgactcactgttcgcagg
gagtccttcccaggcccctgctgtgatgaacccacccctctgacactaccttccatcgcc
cctcccttggaccacctcgcccccccctccagccacggacccccgaaggagacccgtgga
ggatgttctggtggagttaaactacgcatcaagaacagacgcagcgagcccgtctccaga
ccacactcgtggcactccaccaaactaggcgagggccagccagaccccagcatggtgcag
atatcccagggcaccatagaccctccttggcatcacacattcaactccagtgcgtccact
acagacctgtcaggttacgacccaggttacctgaggaagagtccagaccagtacagttct
agaggaagtatggagagccttggggagcaccacggccacccagcctacagctcttcctgc
caccagctgtctgcctccaagtcctccaacagcatggaccaccttcacagcaaaagggac
tcagcctactcctccttctctaccagctctagtatcccagagtacctagcggccactccg
acctttagtaaggaaaggtcatactccatggagacggttccacagaggggtggggttagc
ggaggagggggaggggccgtggcggagggcatgcagcatgctgacatccgatacatccgt
acggtctacgacccccagcagggaggtgcccaagagcacgaggtcagctccgctgcgttg
ctacgcaaccacgaggccggcagggcgggttctcatagtgggggcaaggcctcctgtcac
cgcggcagtagtagctgtagtaacagcagtggcggaagcaacgacggtaataaccccaaa
cgacacagcgttgggccaatctggggtcagtctcaatccgccagccgcagtccctatgaa
agcctgaagggggcgccagctcctcccatgcggagtgacagctacgcggcgatcaggcac
cacgagaggcccaattcctggtccagcctggagcagactcgctccctcagggctctccac
aaggggtccacctcctcctggtaccactcctctggctccgtggcctccggctcggggaag
ggctcctacggggccgagggccagctccacaccgtcatagagaagagtcctgagagcagc
cccaccatcaagcccaaacagggcgtgggtcaagtcccccatccccctcagccccagaat
acatctggccgcctcatgtcgccccagggcatctaccccgtgcccccttcggagacccac
tatgcacagatgcccaccagcagccccagccccagcagtgtgtacccaggcctggccagg
gagagcagtctgagcagacagagagagctccaggggttaggggtgggggtcagtgtggat
acagggatcgaggtatatgtagagaacggataccaaagcaacactttcaactcttatgtc
acctgttccaaccagcctcagcatcatgacttagctccgcctccaaccaaacagccagcc
cagcctgttaacagagggggtgacagaggacatgaggagacccaaaccaaactgggtctc
tccgggtctcatttgaaaggggagggacaaaccgtctcccgaaggcagagccagcagggt
catggacagggtcaggtgtacagaccctcctcagcccagtccataggccaggagaggagg
gacccatacactccagtccagccgcggagagagaggctacccaggtattcccagggctca
gagagttacactgagaagcatcaggtcagacacactgaacacagccatccagaccctcag
cctcccactaccatgcccactaagatatccaaggtccatgttcctcagcggatcaggact
agcagtaccccagccaaagggcctgatcatcgggtcaacaaccagaggtccaggtccccc
atccggcactacagcgaccccagtccatcccaccaccagaagaaccagaggggaccagag
caccccctgacccgactagagaatgccctagcggaggttcagcattgtgccagtccagag
agctccactaggagtcggagcagccaccagaggaacccgtctgtcctggagaaggtaaac
cggtttgagcgccacgagcagaggaagcagaggagtcaaagcatcaatgccacccacacc
aacctggcaccctcctcctcccgtccaactcagccccagcctcagcccaagcaccatgag
agggccatgagctatggtactggtatggatgacctgcgtaacatgctggagagaagcagc
agccccagcagcacctgcagaacactgagctccacctctagcgcacatcatggtaaaact
acggtggcccacaagggtcatcattacgcagagcagcagaggccagcaagttatgaccaa
gccaagccccagacctccagggacccccaccaccagcttaaccccatggaccctaaccct
ggctcggccctacagaggagcaggagcaccttccaactggggagccaggaggagaacggc
catgacagggacagagagttccattggagggatgacctgcaggacctactggggaccatc
caggacacgtcttttaaccgggcctacagggacagtgtcaaggacgcccagtccaaggtg
ctccgatccacctccttcagacgcagggacctgggaatcagctccagctctaaccagagc
tccaacaaccccccccctggtgtcaacaacaaccccctcctggtgtcaacaacaaccccc
tcctggtgtcaacaacaaccccctctgtccccgctaagcacttatccttggagcagaagg
cagtggcccccaagaccggtcccaaatcctccattgtcaccaccactgccccagccactc
ccctgtcccctcacacccccaaaagagaggcacacgatcacgaccccagacccagtccca
gccccaaccacctctccctcccctcacacccccaaagagaggcacacgatcaccactcca
gacccagtcccagccccaaccacctctccctcccctcacatccccaaagagaggcacgtt
gtcacccccaagcccgagaggttcagccccccagagctccccagtgtcccagccttgggc
ccaccagtcccggcccgaatcggtgggcgtaagaggctcaccatggagcagaagaagaga
tcatactctgagccagagagcatgcacgaggtggggttagagtctgacccgaggaggagt
gcccagcaccagcagatcctgttccaaggcacagagaccagcgtggcagaccgcaggagg
atgtttgaggtggcaaccagtcgcagcctgagctccagctcccaggctcctcaggccctc
cagggctcccgggctggtctagccgtctcccggccggagctctggcagctgcagcaggat
gccctggccgactacatggagaggaagagaggctggaggacagacagggacaggtccgag
gagagacggcatcgtcaccggccccacagtgcctacctccagcccttcacagacacccag
agtgtctcttccacctccaccaccagcctagcctctctccaggatctgtttggcccagac
agcagcctgtctggtgaggaaaggctctgctccaccctgcctcccggtctgcagctccag
gacagtatccacccaggcagggtgaccacaccacacatcatccatgcccaggcccccacc
tcagtctccacctcccaccaataccccactggatttggatccaacaggcctctggaggga
gtcccagccaaggcctacgaggctttccggagccagcgaggcgatgtggcttttgaaaga
acggctccagcccgcagctctgggaagtccgcctcagcggaggatcttctagaacactct
gaggagaggcctgcaccacagcacttcagatcccactcctcgccctctgtagagaggctc
aaccaggacttcatgacaggaggagatctgaggatgtttccggacttctctaatgaaccc
cggctgttcacacaccatgacaacaacaggtccatggacaagcagcgtttaaagcgtcct
gtctcagcctcccagtcccagtatgtacccacccactacctgctgaatcagggtccttcc
caaagcaacacccctgtgatgaggagagagaggcagaggaaccccgaccgccagcgggcc
cttagtgcctccggcctggctgcctctgtaggtctaccctgccccttctcctccccaggc
accagccccaacactagccttgactggcaggtcagcgagagccagggaaacctggatgcc
atcgccttcccctgcctgttgcaggttgacgctcccagagccgtgtccccagagaccagg
cggagcaccacagcacatcagggccagaaccaagatctgcagaccaggaccagactgggc
tcatcagacaccagcacctcagaggagaccctgaaagactttcccatagagagttccata
ccaaagaacatcctacccctggacatacctgagacctctctaaccccacctcctcctaaa
acctctcccagaccacaccccctgctctccctccgcatctcagagtccaacctgcaggag
accccgcccttacacatagccccgcccacacaggtagtccctccaatagtctccttacag
gactatgacgaggtgttcctccaggagctggcccctccctcccctcctcctcccccgctc
cccatcagggagacggacatcacagaggacttcccacctcctcctcccctcctcctcctc
ccctcctcctcttcacccccagacaaagaggagcatcgtcctgagctacagcacttcaac
agctgtgagttcctggaggctgtgtgtccagagagaagaccatccatctcctccccttcc
cctcagacagtccccctctctatcccccagcctgagactccgacccaccagacccccatc
gaccccagcagcagtatcccagatccccagcaggggcctagcggtaaggaaagcctgggg
ttagagtaccatctcctggccaggagggagaggtctgctggggagctgaaggtggaagcc
ctggtcagacagctggtgtcccggggggataagaccctgagcccgatgctggacacctgg
cccgggggcggacggaccagcaccatggacctgatggaagagatcttccccgctggggga
gggaggttgccgtggcaacgccgtaggagcagcacctggctggaggacagaagtcaagat
ggcgtctgttctacaggacctagtctgctgcagaaaacagagccgggaagaggaatagat
ctggatgaggaagaggcagacctcaatcagaaaaaggtggagctactccaggctctgacc
cttagcgttgcctcactccgagaggagagagaggttctgggtgaggagcagaggaggttc
cgggccctagggggccacatggagagtctggtccaggagcgctgtaagcccaacgagaag
gagaagtacaggatgttcatcggggacctggataagatagtcaacttgttgatgtctctg
tgtggccggctggcccgggtccataacgctctctacgacctggacagagaggaggagaca
gaggacagcgcagaggagagggagtccttacagcagaagcgcaggcagctgtgtagtcag
cacgaggatgccagggagctgaaggagaatctggatcgtcgggagcgtgtggttctgaac
atcctgggtgggtacctgaccgggccgcagctaagagactaccagcattacgtctgtatg
aaacctgccctcctgatccgacagagacacctggacgagctcatcaagcagggggacgag
cagcttgacaggctgatagagagtatctctcctggggaccaccaggccttgctctgctgc
tcctccaacccagggttaggccccaggggtcccagtcctaaccttggtcctacccataat
gtccgctccatcactgtaacatccctgtga
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integrated database retrieval system