Oncorhynchus tshawytscha (Chinook salmon): 112239140
Help
Entry
112239140 CDS
T05605
Symbol
fn1b
Name
(RefSeq) fibronectin 1b isoform X1
KO
K05717
fibronectin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112239140 (fn1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112239140 (fn1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112239140 (fn1b)
04810 Regulation of actin cytoskeleton
112239140 (fn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239140 (fn1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112239140 (fn1b)
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112239140 (fn1b)
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112239140 (fn1b)
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
112239140 (fn1b)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
112239140 (fn1b)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112239140 (fn1b)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
112239140 (fn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
fn2
NDNF
Interfer-bind
Arylsulfotran_N
Y_Y_Y
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
112239140
NCBI-ProteinID:
XP_042175381
LinkDB
All DBs
Position
Unknown
AA seq
2499 aa
AA seq
DB search
MTGSPVTGLLVALCVSSAVHCMPKNQGKNKRQVQEQVYPELADTVPLAQGCDENGHPYRL
NDQWEKAYRGSTLLCTCNGAAGIKCKTKPQGEETCYDKYNDQTYPVGATYERAKDGMMWD
CTCIGSARGKISCTIGNRCHEGGRSYKIGDTWRRPHETGDYMLDCVCLGNGKGEWTCKPV
SERCYDNTGGASYVVGQTWEKPYQGWMMIDCTCLGEGNGRITCTSRNRCNDQDTKTSYRI
GDTWTKTDANRHQLQCLCTGNGRGEWKCERHSATTGTGVSTGTGLGTGTGSTHVTIQTEL
HQPSTLPEPPQEGACRTDSGATFHVGMRWIRTQGSKQMLCTCQGTGAVSCEEKEGQSQVY
GGNSEGQACVFPFVFMDKTYYSCTSEGRTDGQLWCSTTSDYHRDQQYSYCTEKNSLVSTR
GGNSNGALCQFPFLYNGRNYTDCTADGRRDGMRWCGTTTNYEGEQRYGFCPMAAHEEACT
TNDGVMYRVGDQWDKRHDVLGHMMQCTCLGNNRGEWSCIAYSQLKDQCIVDGLTYEVSQT
FTKRHDQGYMMNCTCYGQGRGRWKCDAIDQCQEPESRAFYQIGETWDKTIHQVLYRCYCY
GNGIGEMSCEPQQTFPGGHRPVQVIITEAGKQPDSHPIQWNAPASSHITQYILKWRVKNT
RAPWREATIPGNLNSYTIAGLRPGITYEGQLISILRFGRREVTRFDFTTTYGSLGVTSEG
ETTQPPPVVDTSESVTEITSSSFIISWVSASDTVSGFRVEYELSEDGAKPQVLDLPRTTT
SVSISDLLPGRRYNVNVYEVSPQGEPTLILTTSQTTAPDAPAEHQINQVGETSISISWSK
PQAPITGYRLVFTPSVEGSSTELILPDTETSVTLVDLRPGLLYNISIYAVEENQESEPIF
VQVNTAGEPAPEEVHSPTDLQFYEVSDAKIIITWTGPPSEVSGYRVTFAPVTPGDTPQRP
LQLPMMANAYAEITHLQPGTLYRFNIYAINGGVESEPLTGERATKPDAPTNLRFTDIGED
SVIVIWEAPRASISGYRLFLSVEGSSPTQKRIPGGQTQFPLRGLRPDTDYTVKLHSEQDN
VLSEEVNGIFTTSPKMGNAPRFTTDVTDTSIIISWTPVSRFSFRLSVRPSQGGESPRDVT
SDSGSIFVSGLTPGTEYTYSVQPIINGRDRGNPITKNVVTQLSPPTDLSTQSNADTGELT
VLWGGANTPDITGYRVTCTPTNGQRGNSLEELVQPVQNQLILENLSPGVEYNVSVYTVKD
NLESVPVSTTVTQDVPKLNDLDFVDVTDTTVGLRWTALVNVTAVTSYRVTVMASGESLPI
IMDTVDSSTGHYTVRGLEPGVDYDISVTTITEEGESEPATRRTQTQTAVPAPTNLNFGGV
GPDHMRVSWTVPNVPTPSDITRFVIRFHPSSNDDDVKELNVGGATNTFLLQNLLPNTEYR
VSVVCVYEERESAPVTGTQRTTLDSPTGLDFADVLTNSFTIHWLAPGAVITGYRIHYQMT
SGGRAKDERLPPTRSHFTLTGLAPETEYSVEVYAVSGNQESLPLTGTQATISDAPTDLEV
TSTSPTSITIRWDAPSVTVRYYRITHGETGGESPAKEFTVPGSQSEATISNLNPGTDYTI
TVYAVTGRGDSPASSTPIYISHKTDVEGPTNMDVTDVKDNTITVRWSAAQGPIKGYRVTS
VPKNGQGPSFSEVVAPDQTEITFTGLMPTVEYVLSVTALGTDGEPSTPLVENAITAMDRP
KALSFSEVDSTSLRITWDSPDGTVTSYRVLYSSPEEGERELRPAPRGTDDTVVLRNLRPG
TEYTVKVIALHGRTPSTPLVGTQATAIPAPTNLDISEVGDTSFIVSWRSPSSGLSGYRVV
VNPKNNNGPTKEMTIAPDTTRAVVPGLMVATLYTVHVYALKNSVTSRPLEGEVTTLDNIS
PPRRVRISDVKDSAITLTWRAKVETITGYLIEAQPLGGSRPTIKKTIPGEQRTYTITGLE
PGTSYTIHIYTINGDARSAPFTLTATTAKPAVHSPTNLQFTSLTPNSISFSWEPPATRIT
GYYITYEEAGRAQPRELTPRPHAGQNYATISGLRPGTEYIIKIIALQNVQRSTPLVGTAR
TQRESLLTLPLPNRPGGYDHLDVPEEKESRVPTVVGNNGLDTLGGQGQNVEYTEYNNQKP
QTPYGNGQTPYGNGQTPYGNGQTPLVFVPLPDAEGRRVPVVSVNVPGGSPFGFPEKDTGI
PQEAQTQTTIAWKPYKQSSEYLVSCNPLTHVNEKMFQMRLPGTSTSATLIGLTSGASYNV
IVEALKGALKHKILEEIVTAGNTLTEGSTGTDKDSCYDTFTATYHDVGTEWERMSETGFK
LWCRCLGLGSGHFRCDSSKWCHDGGNNYRIGEKWERQEEKGPMMSCTCLGNGKGEFKCEP
HESTCYDDGKMYQIGNQWQKEYLGAICTCTCYGGQQGWRCENCRRPGAEVDSSLLQPVRY
RDPTNTLRKVNIQCPIECLRPELLADALAEGHIPQNPLE
NT seq
7500 nt
NT seq
+upstream
nt +downstream
nt
atgactggtagcccagtgacagggctgctggttgcgctgtgcgtaagcagcgcggtccac
tgtatgccaaagaaccaagggaaaaacaagagacaagttcaggaacaagtttaccccgaa
ctcgcagacacagtaccccttgctcaaggctgcgatgagaacggacatccttacagacta
aacgatcaatgggagaaggcttaccgcgggagtacactgctttgtacctgcaacggagcg
gcagggatcaaatgtaaaacaaaaccccaaggggaggagacctgctatgacaaatacaac
gaccagacgtaccctgtgggtgcgacctacgagagggcgaaggacggcatgatgtgggac
tgcacctgcatcggttccgcccgcggcaaaatcagctgcacaatcggaaaccgctgccac
gagggaggcagatcctacaaaatcggggacacttggagaaggccccacgagaccggagac
tacatgctggattgcgtctgtctgggaaacggcaagggagagtggacctgcaaacccgtg
tcggagcgttgctatgacaacactgggggagcatcctacgtggtggggcagacctgggag
aagccgtaccaaggctggatgatgatcgactgcacctgtctgggggagggcaacggacgc
atcacctgtacctctaggaaccgttgtaatgaccaggacaccaagacctcctaccgcatc
ggagacacatggaccaagacagatgctaacaggcaccaactccagtgtctgtgtacagga
aatggcagaggagagtggaagtgtgagagacactctgccactactggcacaggtgttagt
acaggaacaggtttaggaacaggtacaggaagtactcatgtgaccatccagacggagctc
caccagccctccaccctccccgaacccccccaggagggggcttgccgcacggactcgggc
gccaccttccacgtgggcatgcgctggatcaggacccagggcagcaagcagatgctgtgt
acctgccagggtactggtgccgtcagctgtgaggagaaggagggccagagccaggtgtac
ggtgggaactcagaaggccaggcctgtgtgttcccctttgtgttcatggataagacctac
tactcctgtacctcagagggacgtactgatggacagctgtggtgcagcaccacctctgac
taccatagagaccagcagtactcctactgtaccgagaagaactccctggtgtcgacccga
gggggtaactccaatggtgccctgtgccagttccccttcctctacaacgggcgtaactac
actgactgtaccgccgatgggcgccgcgacggcatgaggtggtgcggtaccacaaccaac
tacgaaggagagcagcgctacggattctgccccatggctgcccatgaggaggcctgcacc
accaacgacggggtcatgtaccgtgtgggagaccagtgggacaaacgccacgatgtcctg
ggtcacatgatgcagtgtacctgcttgggcaacaaccgcggagagtggagctgcatcgcc
tactcccaactcaaagaccagtgcattgtggatgggctgacctatgaggtgagccagacc
ttcaccaagcgccatgaccagggctacatgatgaattgcacctgctatggacagggacgc
gggcgctggaagtgcgacgccatcgaccagtgccaggagcctgagagcagggcgttctat
cagattggagaaacctgggacaaaaccatccaccaagtcctctaccgctgctattgctac
ggcaacggtattggtgagatgagctgcgagccacagcagaccttcccaggtggccaccgt
ccagtccaggtgataatcacagaggcagggaagcagcctgactcccaccccatccagtgg
aacgccccagcctcctcacacatcacccagtatatcctcaagtggagagtgaaaaacacc
cgtgccccctggagagaggccaccatcccaggtaacctgaactcgtacaccatcgctggg
ctgcggccaggtattacctatgagggtcagctgatcagcatcctgcgctttggacgccgc
gaggtcacccgctttgacttcaccaccacctacggctcccttggggtgacctctgagggt
gagacgacccagcctcctcccgtggtggacacgtctgagtcggtgacagagatcacgtcc
agtagcttcatcatctcctgggtgtcagcctccgacaccgtgtcaggcttcagagtggag
tatgagctgagtgaggacggagccaaacctcaggtcctggacctgccccgtaccaccacc
tctgtgagcatcagtgacctcctgcctggccgtagatacaacgtcaacgtgtatgaggtt
tcccctcagggagaacccaccctcatcctcaccacctctcagaccacagctcctgatgcc
cctgctgaacatcagatcaaccaggtgggagaaacctctatctctatcagctggtccaag
ccccaggcccccatcacaggctaccgtttggtcttcaccccgtcagtagagggcagcagc
accgagctcatcctcccagacactgagacctccgtgaccctggttgaccttcgacctggc
ctgctctacaacatcagcatttacgctgtggaagagaaccaggagagcgagcccatcttc
gtccaggtcaacacggccggagagccagcaccagaggaagtccactccccgaccgacctt
cagttctacgaggtgtctgacgcgaaaatcatcatcacctggaccggccctcccagcgag
gtgtcgggttaccgcgtgaccttcgcccccgttacccccggtgacacgccccagaggccc
ctgcagctgcccatgatggccaacgcgtacgcagagatcacccacctgcagcccggaacc
ctgtaccgcttcaacatctacgccatcaacggaggagtggagagcgagccgctgacggga
gagagagccaccaagcccgacgcccccaccaacctgcgtttcactgacatcggcgaggac
agtgtgatagtgatctgggaggctcccagggctagcatcagcggctaccgtctgttcctg
agcgtggaaggctccagcccaacccagaagagaatccccggcggtcagacccagttccct
ctgcgaggcctccgccccgacacagactacaccgtcaaactgcactctgagcaggacaac
gtgttgagtgaggaagtcaatggcatcttcaccacctccccaaagatgggtaatgcccct
cgcttcaccactgatgtgaccgacacctccatcatcatctcctggacccctgtcagcagg
ttcagcttcaggctgtctgtgaggcccagtcagggaggagagtcacccagggatgtgacc
tctgactcaggaagtatctttgtgtcaggcctgacccctgggactgagtacacttacagt
gtacagcccattatcaacggacgtgaccgcggcaaccccatcactaaaaacgttgtcact
caactgtctccccccactgacctcagtacgcagtccaacgcggacacgggtgagctgact
gtcctgtggggcggcgccaacacgccagacatcacaggctacagagtgacatgcaccccg
accaatgggcagcgaggaaactccctggaggagttagtccagccggtccagaaccagtta
atcctggagaacctgagtccaggagtggagtacaacgtctctgtctacactgtcaaagac
aacctggagagtgtccctgtgtccaccactgtcacccaagacgtgcccaagctaaacgac
ctggactttgtcgacgtcaccgacaccactgtgggcctgcgctggaccgccctggtaaac
gttaccgccgtcaccagttaccgggtaacggttatggcgtcgggcgagagtttgcccatc
atcatggatacggtggactcgtcgacgggccattatacggtgcgcgggctggagcccggt
gtggattatgacatcagtgtcactacgataacggaggaaggggagagcgagccggccaca
cgcagaacgcaaacccagactgccgtccccgcccccaccaacctgaacttcggaggggtg
ggccccgatcacatgagggtcagctggaccgtccccaacgtccccacgcccagtgacatc
acacgcttcgtcatccgcttccaccccagcagcaatgacgacgatgtcaaggagctcaac
gtgggcggagccaccaacaccttcctgctgcagaacctgctgcccaacacagagtacagg
gtgagcgtggtgtgtgtttacgaggagagagaaagcgcaccagtcactggcactcagaga
acaaccctggactctcccactggcctggactttgctgacgtcctgaccaactccttcacc
atccactggctggcccccggcgccgtgatcaccggctaccgtatccattaccagatgacc
agcggaggcagggccaaggacgagagactgcccccgaccaggagccacttcaccctgact
ggcctggctcccgagacagagtacagtgttgaggtctacgctgtcagcgggaaccaggag
agtctgcctctcactggcactcaggctactatctctgacgcccccaccgacctggaagtg
acctcaaccagccccaccagcatcaccatccgctgggacgccccctctgtcaccgtgagg
tactacaggatcacccacggagagacaggtggagaaagccctgctaaggagttcactgtc
cccggctcccagtccgaggccaccatctctaacctgaacccagggacagactacaccatc
accgtctacgctgtgacagggagaggggacagcccggcctccagcacacccatctacatc
agtcacaagactgacgtggagggccccaccaacatggacgtgacagatgtgaaggacaac
accatcacagtgcgctggtccgcggcccagggccccatcaagggctacagggtcaccagc
gtccccaagaatggacagggcccctctttctctgaggtggtggcccctgatcagaccgag
attacgtttactggcttgatgcccacggtggagtacgttctgagtgtgaccgctctggga
accgatggagaaccttccacacctctggtagagaacgccatcacagcaatggaccgtccc
aaggccctgtccttctctgaggtggactccacctccctgaggatcacatgggacagtccg
gacggcacggtgacatcataccgtgtgctgtactccagccctgaggagggcgagagagag
ctgcgcccggcgcccagagggacagacgataccgtggtactgaggaatctccgccccggc
acagagtacactgttaaggtcatcgctctgcacggacgcacccccagcaccccactggtg
ggcacacaggccacagctatccctgctcccaccaatctggacatctctgaggttggtgac
acctccttcattgtctcgtggcgctcccccagctccgggctgtctgggtaccgtgtggtt
gtcaaccccaagaacaacaatggacccaccaaggagatgaccatcgccccagacaccacg
cgcgccgtggtcccaggactcatggtggccactctgtacacagtgcacgtttacgccctg
aagaactctgtgaccagccgacccctggagggagaggtcaccacgctggacaacatcagt
cctcctcggcgtgtgcgtatctctgacgtgaaggactcggccatcacgctgacctggcgt
gctaaggttgagaccatcaccgggtacctcattgaagctcagcccctcggtggcagccgc
cccaccatcaagaagacaatccccggagagcagcgcacctacaccatcactggtctggag
ccaggcacctcctacactatccacatctacaccatcaacggcgatgcacgcagcgccccc
ttcaccctcacggccaccacagccaaaccagcggtgcattctcccaccaacctccagttc
acctccctgacccccaactccatctccttcagctgggaaccccccgccacgcgtatcaca
ggatattacatcacctacgaggaggcaggcagggcgcagccccgtgagcttaccccccgc
ccccacgctggccagaactacgccaccatctctggtttgagaccaggtaccgagtacatc
atcaagattatcgctcttcagaatgtccagagaagcaccccattggtgggcacggccagg
actcaacgtgaatccctgcttacactgccactccccaaccgccccggaggctacgaccac
ctggacgtgcctgaagaaaaggagagccgtgtcccaacagtagtaggtaacaacggccta
gacaccctggggggccagggccagaacgtggagtacactgagtacaacaaccagaaaccc
cagacaccctatgggaacggccagactccctatgggaacggccagacaccctatgggaat
ggccagacacccctggtgtttgtgccccttccggacgcggaggggcgcagggtgccggtg
gtgagcgtgaacgtgcctggtggctctccctttggttttccagagaaggacacaggaatc
cctcaggaggcccagacccagaccaccatcgcctggaagccttacaagcagagttcagag
tacctggtgtcctgcaaccctctgacacacgtcaacgagaagatgttccaaatgcgtctg
cctggtacctccaccagtgccactctgatcggcctgaccagcggagcctcctacaacgtt
atcgtagaggccctgaagggggcactcaaacacaagatcctggaggagattgtcaccgcc
ggcaacaccctgacagagggttccaccggcacagataaggactcgtgctacgacaccttc
acagcaacctaccatgacgttgggaccgagtgggagcgcatgtctgagacgggcttcaag
ctgtggtgcagatgtctgggactaggcagtggacacttccgatgtgactcctctaagtgg
tgtcatgatggaggtaacaactaccgtattggggagaaatgggagcgtcaggaggagaag
ggccccatgatgagctgcacctgcctgggcaacgggaagggagagttcaagtgtgaacca
catgagtccacctgctatgacgatgggaagatgtaccagattggtaaccagtggcagaaa
gaatacctgggagccatctgtacctgcacctgctacggaggacaacagggctggcgttgt
gagaactgtcgtagaccaggtgctgaggttgactctagtctgctgcagcccgtccgatac
agggaccccaccaacacactacgcaaagtgaacatccagtgccccatcgaatgccttcga
cctgaactactggcagacgcactggcagaaggacacatcccccagaatcccctggagtaa
DBGET
integrated database retrieval system
