Oncorhynchus tshawytscha (Chinook salmon): 112245009
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Entry
112245009 CDS
T05605
Name
(RefSeq) vinculin isoform X1
KO
K05700
vinculin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04520
Adherens junction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112245009
04520 Adherens junction
112245009
09142 Cell motility
04820 Cytoskeleton in muscle cells
112245009
04810 Regulation of actin cytoskeleton
112245009
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112245009
04147 Exosome [BR:
otw04147
]
112245009
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112245009
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112245009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
NEMO
Motif
Other DBs
NCBI-GeneID:
112245009
NCBI-ProteinID:
XP_024268710
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Position
LG01:47958623..48009611
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AA seq
1129 aa
AA seq
DB search
MPVFHTKTIEGILEPVAQQISHLVIMHEDGEVDGKAIPDLTGPVAAVQAAVSNLVRVGKE
TVQTTEDQVMKRDMPPAFIKVENACSKLVQAAQMLKADPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEIVETMEDLITYTKNLGPGMTKMSKMIEERQQ
ELTHQEHRQMLFNSLNTVKQLLPVLISAIKIFVATKSTHSAGVDEAERNRCFTFEKMSAE
ISEIIRVLQLTTWDEDTWANKKDMECMKRSLAVIEAKMTMAKGWLKDSHGQPGEPGDVAV
RVILDEAGKVGELCAGRERRDTLGTAKTLGQMTDQVTELRVRGHGLSPPCVQRAGQCSQG
LDLLLEKVDGAIHRLEALTKAKLAFARRLDAAQAWLADPNGGPEGAENIRALLANAQKIA
DLCEDLLERDDIQRSINEIAGLTARLVELRKRGKGDSPEVRALCKLIGAALLTLQAKTNR
AVANMRPAKPAITLQGKMEQALRWVNNPGQDDRGVGQAAIRGLLSEGRRLAGGLGGPYRQ
DMIVCCDRNEALMTSLADIAGRGEAEAPQAKATASQLQESLKDLKGRMQEVMTQEVSDVF
SDTTTPIKLLAVSATAPPEAPHREEVFDERAGNFEAHAGRLGATAEKAAAVGSANKNTVE
GIQATVKHTRELTPQVTSAARILLKNPGNQAAYEHFDTMKNQWIDNVEKLTGLVDEAIDT
KSLLDASEEAIKKDIDKCRVAIANVQPQMLVAGATSIARRANRVLLVAKREVENSEDPWF
REAVKRASDILSHTISPMVIDAKAVAGNIQYPALQKAFLDSCLRILAAVGKVREAFSLPE
PDFPPPPPDLDKLHVSDQEQAPPKPPLPEGEVPPPRPPPPEEKERDKDEDFPEQKAGELL
SEPMMVAARQLHDEARKWSSKPEEEEGVEVDDEDEFTDGEDDYEPELLMMPSNGNAVNQP
ILAAAQSLHQEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRAMIQCAKDIAKA
SDEVTRLAKEVAKQCTDRRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESE
QATEMLVHNAQNLMLSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgttccacacgaagaccatcgagggcatccttgagccggtggcccagcagatc
tcccacctggtcatcatgcacgaggacggggaggtggacgggaaggccatcccggatctg
accggcccggtggccgcggtacaagcagcggtcagtaaccttgtcagggtgggaaaggag
actgttcagacaacagaggaccaggtgatgaagagagacatgcctcccgccttcataaag
gtggagaatgcgtgttctaagctcgtgcaggcagctcagatgttgaaggcggatccctac
tcggtgcctgccagagactacctcattgacggttccagaggaatcctgtctggaacctca
gacctgctgctcactttcgacgaagctgaggtgcgtaagatcattcgtgtgtgtaagggg
atcctggagtatttgactgtagctgagattgtggagaccatggaggacctgatcacctac
accaagaacctaggaccaggtatgactaagatgtctaagatgattgaggagcgacagcag
gagttgacccatcaggaacacagacagatgctattcaactccctgaacactgtcaaacaa
ctactgcctgtactcatatcagccataaagatatttgtagcgactaagagcacgcatagt
gctggggtggatgaggcagagagaaacagatgctttacgtttgagaagatgagtgctgag
attagtgagatcatcagagtcctacagcttaccacctgggatgaagacacatgggccaac
aagaaggacatggagtgtatgaaacgttctctggcggtgatagaggctaagatgaccatg
gcgaaaggctggctcaaagactcccatggacaaccaggcgagcccggggatgtagcggtg
cgtgtgatattggatgaggcagggaaggtaggagaactgtgtgctggaagggaacgcaga
gacacacttggaacagcaaagactctgggacagatgactgaccaggtcacagagctacgt
gtcagaggacatggtctgtctccaccatgtgttcagcgggccggtcagtgttctcagggt
ctggacctgctgcttgagaaagtggacggtgccatccacaggctcgaggctttaactaaa
gctaaactggcattcgctaggagactggatgctgcccaggcatggctggcagatcctaat
gggggtccagagggtgcagaaaacatcagagccttgctggccaatgcccaaaaaattgct
gacctgtgcgaagacctcctcgagagagacgacatccagagatccatcaatgagattgcg
gggctcaccgcacgactagtggagctacgcaagcggggtaaaggggatagtccagaggtg
cgtgcgctatgtaaactcattggagcagctctcctgaccctgcaggctaagaccaacaga
gcggtggccaacatgaggcctgccaaaccagccatcactctgcaaggcaagatggagcag
gccctacgctgggtcaacaaccctggacaggatgacaggggtgtgggtcaggcagcaatc
cggggcttgttatcggagggccgccggttggctggagggcttggggggccgtaccggcag
gacatgattgtctgctgcgatcgcaacgaggcgctgatgacatcactggcagacatagcg
gggaggggagaggccgaagccccgcaggctaaagctactgcttcacaactacaggaaagt
ctgaaggacttgaagggtcgtatgcaggaagtcatgacccaggaagtatccgatgtgttc
agtgacaccaccacccccattaaactactggctgtgtctgcgactgcccccccagaggcc
ccacacagagaggaggtgtttgatgagcgtgctggtaactttgaggcccatgcgggtcgc
ctgggcgcaacagcggagaaggcggcggccgtgggatcagctaataaaaacacagttgag
ggaatacaggctaccgttaaacacaccagagaactcactccacaggtgacctccgcagct
cgtatcctgttgaagaatccaggtaaccaggcggcctacgaacactttgacaccatgaag
aaccagtggatcgacaatgtagagaaactcactggtctggtggatgaagccatagacacc
aagtctctgctggatgcgtctgaggaggcgataaagaaggacatcgataagtgtcgtgtc
gccatagcgaatgtacagccacagatgctagttgccggggcgaccagcatagctcggcga
gccaatcgcgtacttctggtagcgaagagagaggtggagaactcagaggacccatggttc
agagaagcagtgaaacgtgcatcagatatacttagccacactatatcacctatggttata
gacgctaaggctgtggcaggaaatatacagtatccagcccttcagaaggcctttttagat
tcttgcctcagaattctggctgctgttgggaaggtcagagaagccttcagcctcccggaa
ccagacttcccccctccacccccagacctagacaagctacacgtgagtgatcaggagcag
gccccgcctaagccccccctaccagagggagaggtgcccccaccccgccccccacctcca
gaggagaaagagagagacaaagatgaagactttccagagcagaaggcaggagagctgctc
agtgagcccatgatggtggctgctaggcaactacacgatgaggcacgcaagtggtccagc
aagcctgaggaagaggagggtgtagaggtagatgatgaagacgagtttactgacggtgag
gatgactatgagccagagctgttaatgatgccgtctaacggcaatgcagtaaatcaaccc
atcctagctgccgcacaatcgcttcatcaggaggcgcgcaagtggtccagcaagggaaat
gacatcattgcggcagccaagaggatggcgttgctgatggctgagatgtcccggttggta
cgtggcggcagcggtaataagcgagctatgatccagtgtgctaaagacattgccaaagcc
tcggatgaggtcaccaggttggccaaagaggtggccaagcagtgtactgaccgacgcatc
agaaccaacctgctgcaggtgtgtgagcgtatccccaccatcagtactcagctgaagatc
ctgtcaacagtcaaagccaccatgctgggacgaaccaacatcagcgaggaggagtctgaa
caagctacagagatgctggtccataatgcccagaacctgatgctgtcagtcaaggagacc
gtgagagaggccgaggctgcttcaatcaagatccgcaccgatgcaggcttcaccctgcgc
tgggtccgcaagaccccctggtaccagtaa
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