Oncorhynchus tshawytscha (Chinook salmon): 112256345
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Entry
112256345 CDS
T05605
Name
(RefSeq) rap guanine nucleotide exchange factor 2-like isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112256345
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112256345
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
PDZ_6
RA
cNMP_binding
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112256345
NCBI-ProteinID:
XP_042181562
LinkDB
All DBs
Position
LG08:complement(51597889..51736794)
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AA seq
1674 aa
AA seq
DB search
MASYVDNSFRQAVMMNPAERTQQDLEIVYSYLHGMEALSNLREHQLRIICETVRYERHEA
NEVLYYPDDIGSCWFILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMDQNEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPTGKPPIARGYHTLPADF
SRLHLADGLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATENEPGDMDLSGLPETAVDS
EEDDDEEDMERASDPLMSRDVVRDCLEKDPMDRTDDDIEQLLEFMHQLPAFANMTMSVRR
ELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPEGRPEILCMGNSFGVSPTM
EKEYMKGVMKTKVDDCQFVCIAQQDYCCILNQVEKNMQKVEEEGEIVMVKEHRELDRTGT
RKGHIVIKGTTERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMVVGKKLLEWFHDPSL
RDKVTRVVLLWVNNHFNDFEGDPAMTHFLEEFESNLEREVRVSKMCGHLRLLNIACAAKA
KLRLVTLTKPSREAPLAFTLLGGSEKGFRIFIDSVEPGSKAAEAGLKRGDQILEVNGQNF
ENVQLTKANEILRNNTHLSISVKTNLLVFKELLARPEHDHEAEGEDPPEVDRKNGAPAHL
PKIGDIKKGSRYSIPDLAVDVEQVMGLEKASKKAKANTVGGRNKLKKIFDKTLTSILPPK
PYNDVGVGQSQDDSIVGLKQSKQIPASLPVSSNLSSSNPDLLQSHHRILDFNNQPAPVVT
NMSDQVLRVFKADQQSRYIMIGKDTTAKEVVAQAIREFALTAVPEAYSLCEVSVTPEGVI
KQRRLPEQLSKLADRIQLSGRYYLKSNMETETLCSDEDAQDLLREGQISLLQLSTVEVAT
QLSMRAFELFCAIEPTEYIDDLFKLKSKTGSFCLKRFEEVINQETFWVASEVIREPNQLK
RMKIVKHFIKIALHCRECKNFNSMFAIISGLNLAPVSRLRGTWEKLPSKYEKLFGDLQDL
FDPSRNMAKYRNVLNNQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKE
IRHVGRMASVNMDPALMFRTRKKKWRSLGSLSQGSANAAVLDVTQTGGHKKRVRRSSFLN
AKKLYEDAQMARKVKQYLSNLSLETNEEALQTLSLQCEPSINTLPKNAGGGKRPDTSPVV
SRAASQQRGQLQKGNQALQVPAVALYPSRKKVPVKDLPPFGTSSPQSLKKILSLSEEASE
RHKRQTEDTVSNASSQLSSPPTSPQSSPRKGLGTLKGQSVRKVTFTSKQTGYPRTGDTYS
DSGHSEISSRSSLVSNSSFDMAQEERRGLRHSGGVGDPHAGGVRLERRATTDPDQYSLGS
YSSMQDCRGLYACAMVLSSPSSEELTQDQGDRVSLDAADSGRGSWTSCSSGSHDNIQTMQ
QGRSWETLAFGPGGVIGGSIGVHPPGGPEALLGGPAGLWASQARGSWASASSSSSAAYWG
EDSEGDTGTIKRRGGKDVNTDPETSSITSMGSDEAKQHGRPSPSPITAGNKGLITRKESR
YREPPPTPPGYTALTISDFSEGQTQSPPTAPAHSGRRPPDYTTALQRSRMVTQSPDSHHH
HQAQQHAKRQGLHRTRSPGEEEEPEEEEEGESLSPKLVALRKTVAHTTPETTRP
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttatgtcgataacagctttcgtcaagctgtgatgatgaatccggcagaaaga
acgcaacaggacctggagatagtctactcctatcttcacgggatggaggccctttctaac
ctcagagaacaccagctgaggataatatgtgagacagtgcgctatgaaagacatgaagcc
aatgaagtgctctactacccggatgacattggaagctgctggtttattctactgtccggg
tccgtcttcatcaaggagtccatgttcctgccaagaagcagttttggaaagcgttctgca
gggagcctgagacgcggatgcgagtgcatcgttctggaaccttccgagatgattgtggtg
gactatatggaccaaaatgaggagtacttccagcggcaagcatcgcaccgacagtcccgc
cggaggttccgcaagatcaaccagaagggcgagcggcagaccatcatcgacacggtggac
ccgtaccccaccggcaagccgcccatagccaggggataccacacgctccccgcggacttc
agtcgactccacctggccgacggcttgcacccacaggtgacccacgtttcttccagccac
tcaggatgtagtatcaccagcgactctggaagcagcagcctgtcagacatataccaggcc
acggagaacgagccgggcgacatggacctcagcggcctgcccgagaccgccgtcgactca
gaggaggacgacgacgaggaggacatggagcgagcgtcggaccccctcatgagccgtgac
gtcgtgcgggactgcctcgagaaggaccccatggaccgcaccgatgacgacatagagcaa
ttactggagttcatgcatcagctgccagcgtttgccaacatgaccatgtcggtgaggagg
gagctgtgtgccgtcatggtctttgccgtggtcgagcgggccggcaccatcgtcctcaac
gacggggaagagctggactcgtggtcagtgattctgaatggctcggtggaggtgacgtac
cctgagggcaggcctgagatcctgtgtatggggaacagctttggggtctcccccaccatg
gagaaggaatacatgaagggagtaatgaagaccaaggtggacgactgtcagtttgtgtgc
atagcgcagcaggactactgctgcatcctcaaccaggtggagaagaacatgcagaaggtg
gaggaggagggcgagatcgtcatggtcaaggagcaccgcgagctggaccgcaccggcacc
aggaagggacacatcgtcatcaagggtacgacggagcgtctgaccatgcacttggtagag
gagcactcggtggtggaccccacctacatcgaggacttcctgctgacctacagaaccttc
ctctccagccccatggtcgtgggcaagaagctcctcgagtggttccatgacccaagcctc
agggacaaggttacacgggtagtcttgctgtgggtgaacaatcacttcaatgactttgaa
ggcgaccccgcaatgactcactttcttgaagagttcgaaagcaatctggagagagaggtc
cgtgtctcaaaaatgtgcggccatcttagactgttaaacattgcctgtgctgctaaagcc
aaactgcgtctcgtgacactgaccaagccgtcgagggaggccccgctagccttcaccctg
ctggggggctctgagaagggcttccgcatcttcatcgacagcgtggagcccgggagcaag
gccgcagaggccggactcaaacgaggagaccagattctggaggtgaatgggcagaacttt
gaaaatgtccagctcaccaaagccaatgagatcctgaggaacaacacccacttgtccatt
tctgtgaaaaccaatcttttagtgttcaaggagctactagcccggccggagcacgaccac
gaggcagagggcgaggatccgccagaggtggaccgcaagaatggagccccggcacacctg
cccaagattggggacatcaagaagggctcacgctactccatccctgacctggcggtggac
gttgagcaggtgatgggcctggagaaggccagtaagaaggccaaagccaacacggtggga
ggaaggaacaagctcaagaagatcttcgacaagacgctcaccagcatcctgcccccaaaa
ccatacaacgatgtgggcgtgggccagtcgcaggacgacagcatcgtgggcctgaagcag
tccaagcagattccagcctcgctgcctgtcagcagcaacctatcgtccagcaaccctgac
ctgctgcagtcccaccaccgcatcctggacttcaacaaccaaccggccccggtcgtgaca
aacatgtccgaccaggtgctgcgagtgttcaaggcagaccaacagagtcgatacatcatg
attggtaaggacaccacggccaaggaggtggtggcccaggccatccgggagttcgccctg
actgcggtgcccgaagcctattcgctgtgcgaggtgtccgtcacgccggagggtgtcatc
aagcaacggcggctaccagagcagctgtccaagctggctgataggatacagctcagtggc
agatactacctgaagagcaacatggagacagagactctctgttcagacgaggacgcccag
gaccttcttcgtgaaggccagatctccctcctccagctctccactgtggaagtagccacg
cagctctccatgcgcgccttcgaactcttctgcgccatcgagcccaccgagtacatcgat
gacctgttcaagctcaagtccaagacaggctcgttttgcctcaagcgcttcgaggaggtc
atcaaccaggagaccttctgggtggcgtcggaggtgatcagggagcccaaccagctcaag
cgcatgaagattgtcaagcacttcatcaagattgctctccattgtagagagtgcaagaac
ttcaactccatgttcgctatcatcagtggtctgaacctggccccggtatctagactccgg
ggcacgtgggaaaagctccccagtaagtacgagaagctgtttggggacctgcaggacctg
tttgacccgtccagaaacatggccaagtaccgcaacgtgctcaacaaccagaacctccag
ccgcccatcatccccctgtttcccgtcatcaagaaggacctcaccttcctgcatgaaggg
aacgactccaaagtggacggcctggtgaactttgagaagctgcggatgatcgccaaggag
atccgccacgtgggtcgcatggcctccgtcaacatggaccctgcgctcatgttcagaacc
aggaagaagaaatggaggagtttagggtctcttagccagggcagtgccaacgcggcggtg
ctagacgtcacccagactggcgggcacaagaagcgggtgaggcgtagctccttcctgaac
gccaagaagctgtacgaggatgcccagatggcccgcaaggtcaagcagtacctgtccaac
ctcagcctggagaccaacgaggaggcgctgcagaccctctctctgcagtgtgagccctcc
atcaacacactgcccaagaacgctggtggcggtaagaggccagacacatctccggtggtg
tccagggctgccagccagcagaggggccagctgcagaagggcaaccaggcccttcaggtg
cccgctgtggccctctacccctcccgcaagaaagtgccagtcaaggacctgccaccattc
ggcacgagttcccctcagtcgctgaagaagatcctatcgctgtcggaggaggccagcgag
cgtcacaagcgtcagacggaggacactgtgtctaatgcctcctcgcagctctcctcccct
cccacctccccccagagctcgcccaggaaggggctcgggacactgaagggccaaagtgtc
cggaaggttacctttaccagtaaacagacaggctacccaagaacgggagacacctactcg
gattcgggtcacagcgagatttcgtcgcgctccagcctggtcagcaactcctccttcgac
atggcccaggaggagaggagggggctcaggcactcaggaggggtgggagacccccacgct
ggaggggtgcgtctggagaggagggctacgaccgaccctgatcagtacagcctcggttcc
tactcgtccatgcaggactgccggggcctgtatgcctgcgccatggtgctctcctccccc
agctcggaggagttgacccaggaccaaggggaccgtgtctccctggacgccgccgatagc
ggccgcggctcctggacctcttgctcctcgggttcccatgacaacatccagaccatgcag
cagggacgtagctgggagactctggccttcggaccggggggtgtcatcggcgggagcatt
ggtgtccacccacccggggggcctgaagcattactagggggccccgctggactatgggcg
tcccaggctagaggtagctgggcatcggcctcttcatcttcctctgctgcgtactggggc
gaggactccgagggcgacacgggcacgattaaacggcgaggcgggaaggatgtgaacacc
gacccggagacgagtagtatcacgtcgatggggtccgacgaggccaagcagcacggaagg
ccttcgccatcacccatcactgccggaaacaagggccttatcacgcgaaaggagagccgg
taccgcgagccccctccaaccccgccgggctacactgccctgacaatctctgacttcagt
gaagggcagacacagtcgccgcccacagccccggcccactccggccgccgcccgcccgat
tacaccacggccctgcagcgctcgcgcatggtcacccagtcgcctgactcccatcaccac
caccaggcccaacaacatgccaagcgccaagggctccaccgcacccgctcgccaggcgag
gaggaagagcctgaggaggaagaggagggtgagtccttgtctcccaaactagtcgctctg
aggaagacagtggcacacacaacaccagagacaaccaggccatga
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