Oncorhynchus tshawytscha (Chinook salmon): 112258127
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Entry
112258127 CDS
T05605
Name
(RefSeq) glucocorticoid receptor-like isoform X1
KO
K05771
glucocorticoid receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112258127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112258127
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112258127
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
112258127
Nuclear receptors [BR:
otw03310
]
3. Estrogen like
3C. 3-Ketosteroid receptor
112258127
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Gene cluster
GFIT
Motif
Pfam:
GCR
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
112258127
NCBI-ProteinID:
XP_024288028
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Position
LG09:complement(53731783..53816217)
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AA seq
752 aa
AA seq
DB search
MDNQDKSLERGEEGSFSVNAGSSKSTTLTSVMHLPGSTPQPPATDSCNGLNVTKIQGELS
TAGTTSIGLPIEEAEVKLMGKALRMQNAQKQQQNPQQQQLFENFALLEESISDLNRSNTP
GSSVLGCSNYLLPLKTEDFSPMDKDRLDMETVSFGQSLKDLDVNERLFGDNTLDILRDLD
LPGSLSDLNEFYLADEAAFLSSLSVDDALLVEGNMETKPIVSSSGGNCKNVNGVGQQLGP
GISMSVIKTEKDSDTTFIQLYTPGVIKQENERQSYCQISSLDIPGTHSSVGSMSGPSYHY
RANTSTAVCVQQDQKPVFGLYPPLPSVSDGWNRGQEFGDGSGMSTPSFPVSFSSPTARPE
ASSSTSSAPAKHSGPTHKICLVCSDEASGCHYGVLTCGSCKVFFKRAVEGWRARQNTDGQ
HNYLCAGRNDCIIDRIRRKNCPACRFRKCLQAGMNLEARKNKKLIRFKGQQATTETNAPA
PDERACTLIPKSMPQLVPTMLSLLKAIEPEAIYSGYDSTIPDTSTRLMTTLNRLGGQQVV
SAVKWAKSLPGFRNLHLDDQMTLLQCSWLFLMSFGLGWRSYQQCNGGMLCFAPDLVINDE
RMKLPYMTDQCEQMLKISTEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAVFDEIRMT
YIKELGKAIVKREENSSQNWQRFYQLTKLLDSMQEMVGGLLQICFYTFVNKSLSVEFPEM
LAEIISNQIPKFKDGSVKPLLFHHALNHDTMP
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggataaccaggacaagagcttagagagaggtgaagagggaagcttctcggttaacgca
ggcagttccaagtccaccacattaacttcagtgatgcatttgcctggctccacaccccag
cctccagccacagactcctgtaacggactgaatgtcactaagattcagggtgagctctcc
acagcagggacaacctccattggactccctatagaggaggctgaagtgaagttaatgggc
aaggccctgagaatgcagaatgcacagaaacagcagcagaatcctcaacagcagcagctg
tttgagaactttgctctgttggaggagagcatttcagatttgaatcgatccaacacccca
gggagctccgtacttggatgttctaattaccttctccctctgaaaactgaggacttttca
ccaatggataaggacaggcttgacatggagacggtcagctttggacagtccctgaaggac
ttggatgtcaacgagaggctctttggtgacaatacgctggacattctgcgggatttggac
ttgcctggctctctgtctgacctgaatgagttttacctggctgacgaggccgctttcctt
tcctccctgtcagtggatgatgccctgctcgttgaaggcaacatggaaaccaagcccata
gtcagtagcagtgggggaaactgtaaaaatgtgaatggtgtggggcagcaactgggccca
gggatctccatgtctgtcatcaagaccgagaaggactctgacaccaccttcatccagctt
tacaccccaggggtaatcaaacaggagaacgagcgccagagctactgtcagatatccagc
ctggacatacctggtacccacagctcggtgggctccatgagtgggccgagttaccactac
agagcaaacacatcgacggcagtgtgcgtacagcaggatcagaagcctgtctttggcctg
tatcctccactgccctcagtcagtgatggctggaacagaggccaggaatttggggatgga
tcagggatgtcaactccatcttttcctgtcagcttcagcagtccaacggccagacccgag
gccagcagctccacatcttcagcccctgccaagcacagcggtccaacccataagatctgc
ctggtgtgttctgacgaggcttctggctgccactatggagtcctcacctgcggaagctgc
aaggtcttcttcaagagggccgttgaaggatggagagcacgacaaaacacagatggacaa
cacaactatctgtgtgccgggaggaatgactgcatcatagacaggatccgcaggaagaac
tgtccggcgtgccgcttccgcaagtgtctccaagcagggatgaacctggaagcaaggaaa
aacaagaagctgatccgatttaaaggtcagcaggccacaacagagacaaacgctcccgca
cctgatgaaagggcctgcaccctgatcccaaagtccatgccccagctggtgcccaccatg
ctgtctctgcttaaagccattgagccagaggccatttactctggctacgacagcaccatc
cccgacacctccacccgccttatgaccaccctcaacaggttgggcggacagcaggtcgtt
tcagctgtcaagtgggccaagtccctaccagggttccggaaccttcacctggatgatcag
atgactctgctgcagtgctcctggctgttcctcatgtcattcggcctgggctggcgctcc
taccagcagtgtaacgggggtatgctgtgcttcgcccctgacctggttattaatgatgag
aggatgaagctgccctatatgaccgaccagtgtgagcagatgctgaagatctccactgag
tttgtgaggttgcaggtgtcctacgacgagtacctgtgtatgaaagtcctgctgctgctc
agcacagtaccaaaggatggattgaagagccaggctgtgtttgatgagatccgcatgacc
tacatcaaggagctggggaaggccatcgttaagcgggaagagaactccagccagaactgg
cagaggttctaccaactcactaagttactggactccatgcaggagatggtggggggcctc
ctgcagatctgcttctacacttttgtgaataaatcccttagtgtggagttccctgagatg
ctggccgagatcatcagcaaccagataccaaaattcaaagatgggagtgtcaagccgctt
ctgtttcatcatgccttaaaccatgacacaatgccttaa
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