Oncorhynchus tshawytscha (Chinook salmon): 112261708
Help
Entry
112261708 CDS
T05605
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
otw04140
Autophagy - animal
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112261708
04137 Mitophagy - animal
112261708
04148 Efferocytosis
112261708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112261708
Transcription factors [BR:
otw03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112261708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
112261708
NCBI-ProteinID:
XP_024293046
LinkDB
All DBs
Position
LG11:complement(30162002..30186198)
Genome browser
AA seq
756 aa
AA seq
DB search
MDTGVVPEKKSRVSSDRRKEKSRDAARCRRGKESEVFYELAQELPLPHSVTSNLDKASIM
RLAISYLHMRNLLSTDDEEEQEESEMDSQLNGSYLKAIEGFLMVLSEDGDMIYLSENVNK
CLGLAQIDLTGLSVFEYTHPCDHEELREMLVHRTGTSKKSKEPNTERSFFLRMKCTLTNR
GRTVNVKSATWKVLHCSGHVRVHESPAEQSPGGHKEPSVPYLVLVCDPIPHPSNIEAPLD
TKTFLSRHTLDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLMKTHHNLFAKG
QVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLSGIEEEKMMLSLEQTE
DMRPVKKELEEEESSEPEVSPVLLKEEKSPELDVIKLFTRAVETQPLSSLYDRLKEEPEA
LTLLAPAAGDTIISLDFSSPDSDILQKEVPLYKDVMLPSTSDKLALPLSLLPPSDQHLVP
NTSVDTTEVSTGPDSSSTPGSHSFTEPDSPLDFCFPMESDISAEFKLDMVERLFAIDPEP
KTPFTLQAMEDLDLEMLAPYIPMDDDFQLRTLSPEDPLSCGPAQPLECSSVHLTQEVHRY
PGSPFNAPGSLAASPALAAPEPADSPCPASLLTKTVPQMDREISLRSLASQNAQRKRKMS
LSQAVGIGGLLQDRPGPGKKLKVSELSHADAPSNRTILLLPTDLASRLLGISSEGSGSPF
TLPQLTRYDCEVNAPVGGRQLLLQGEELLSALDQVN
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggagttgtccccgaaaagaaaagcagggtgagctcggaccggaggaaggag
aagtcccgggatgcggcgcgatgcaggagggggaaggaatctgaggtgttctacgagctg
gcccaggagcttcccctgccccacagcgtcacctccaacctggacaaggcctccatcatg
agactggccatcagttacttgcacatgaggaatctgctgagcacagacgatgaggaggag
caggaggagagtgaaatggactcccagctgaatggctcctacctgaaggctatagagggc
ttcctcatggtgctgtctgaggacggggacatgatctatctctctgagaatgtcaacaag
tgcttgggtctggcacagattgacctgacaggacttagtgtgtttgagtacacacacccc
tgtgaccatgaggagctgagggagatgctggtacacagaacagggacctctaaaaagtcc
aaggaaccaaacacagaacgcagcttcttcttgcggatgaagtgtaccctcaccaacagg
gggcgcactgtcaatgtcaaatcagccacctggaaggttctccactgctcaggccatgtg
cgggtccatgaatccccagctgagcagagccccggtgggcacaaggagccgtccgtcccc
tacctggtgctggtctgtgaccccatcccccacccctccaacatcgaggcgccgctggac
accaagactttcctcagccgccacacactggacatgaagttcacctactgtgatgagagg
atcactgagctgatgggctatgatccagaagacctgttaaatcgctctgtgtatgagtac
taccacgccctggactcagaccacctcatgaagacccatcacaacttgtttgcgaagggc
caggtgagcacaggccagtaccgcatgctggctaagagaggaggctttgtgtgggtggag
actcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtgtgtgtc
aactatgtgctcagtggcattgaggaggagaagatgatgctgtctctggagcagacggag
gatatgaggcctgtgaagaaggagctggaggaggaggagagctctgagccagaggtgtcc
cctgtgctcctgaaggaggagaagagcccagagctggatgtgatcaagctgttcacccgg
gcggtggagacccagcccctgtccagcctgtatgaccgactgaaggaggaaccagaggcc
ctcacccttctggccccggccgctggagacaccatcatctccctggacttcagcagcccc
gactctgacatcctgcagaaggaggtgcctctctacaaggatgtgatgctgccctccacc
agtgacaagctggccctgccactctctctgctgccccccagtgatcagcacctggtcccc
aacacctcagtggacaccactgaggtgtccactggtccagactcctccagcaccccaggc
agccacagcttcactgagcctgacagcccattggacttctgtttcccaatggagtctgac
atcagtgctgagtttaaactggacatggtggaaagactgtttgccatcgacccagagcca
aagactcctttcaccttacaggccatggaggacctggacctggagatgttggctccgtac
atccccatggatgatgacttccagctgcgcaccctgtccccagaggatcctctgtcttgt
ggcccagcccaacccctagagtgctcttctgtgcacctcacccaggaggtccaccgctac
cctggctcccccttcaatgccccaggcagcctggcagcttccccagccctggcagccccg
gagccagcagatagcccttgccctgcttccttactcaccaagacggtgcctcagatggac
agggagatctcccttaggtcactggcctcccagaatgcacagcgcaagaggaagatgtct
ctgtctcaggctgtcggaatagggggattgctccaggaccgtcctggtccaggtaaaaag
ctcaaagtgtctgagctgagccatgctgatgctccctccaacaggaccatactgctcctg
cctacagacctggcaagccgtctgcttggcatctcatcggagggcagcggctcacccttc
acccttcctcagctgacccgatatgattgtgaggtcaacgcccccgtggggggtcgccag
ctcctgctgcagggcgaggagctcctgagtgccctggaccaagtcaactga
DBGET
integrated database retrieval system
