Oncorhynchus tshawytscha (Chinook salmon): 112263910
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Entry
112263910 CDS
T05605
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X2
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112263910
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112263910
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112263910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112263910
NCBI-ProteinID:
XP_024296312
LinkDB
All DBs
Position
LG12:complement(13343405..13440509)
Genome browser
AA seq
1733 aa
AA seq
DB search
MEPDNAPYSKLKTAGVGGRALILWTILYSTCFVGLTQAHPEDVDVLQQLGLTGTRTGGGV
SSTGARFAPQGVIPFKSGVILTQRARVQAPLSSVLPPASYPTTNLSLILSLCSHRVNSAF
LFTILSKRRRLQLGVQFILGKVLVYVGQRDLVSFDYDVHNGQWHNLALDIRGQRVSLYTS
CGKTSVHADLHSKKEEALDPEGSFLLGKMAQNSVQFEGAVCQFDIYPSAKAAHNYCKYIK
KQCREADNYRPVNLPSLLPLIPSDPNLTVALLTPVMPTEIPRKAASPNLALTEERTRTKL
VVPTNRPTVAPTLTVRKSFVTPKPGTMSLYRPVAVAPTTARQGLKRPLVVTTQTVTVPLR
TIETQTSPMPTSRGDSLAKKSSAVEPGVKTQKPTESSLTAAPLLSTTPTPPKKKPDHQTT
AASKQGSSSSASSSNTSVLFVQRKQLTTLAAQKPEPRVTNVEAVKDTSFIPVTPPATDGF
QTWDLEPTQFSLLAGPGPPGLKGEPGPAGLQGPPGKPGTPGKRGPRGPPGPHGNPGRPGP
PGLKGRKGDPGLSPGRAPKGERGERGASGPLGLTGQVGRKGQKGHPGPAGQPGDSGEQGA
DGSPGAKGYPGRQGLPGPVGIMGPKGVRGFIGIPGVFGLPGPDGERGIPGVHGKKGKMGR
PGFAGDFGERGPPGPDGNPGELGAPGPNGVLGLIGDMGPLGMMGLPGPCGLKGVPGNPGE
PGLKGDKDDVGLPGEQGENGFQGDKGIQGSPGLPGIRGKPGPHGVTGEPGPDGIPGPPGQ
EGFPGDIGPPGHNGPEGPKGKPGNRGLPGLRGTAGLEGDEGPLGPPGPTGPEGRPGRQGF
PGKTGPEGLKGETGITGEVGKLGERGLMGFIGPVGEPGLAGEKGGRGEMGLPGPPGEKGA
MGHPGTPGECGSSGPLGIPGPAGSRGLGGIRGPKGRRGPRGPDGPAGEKGSVGGKGPDGP
PGKLGFPGEMGKIGEPGEAGPKGFPGRKGPSGAPGAKGIAGEPGLTGPPGTMGPLGEMGV
KGPTGKVGEWGLPGESGEKGALGPAGNLGEQGLIGQRGEMGIDGDAGQSGPDGLKGEKGD
MGPEGGTGERGDTGLKGKEGSPGPPGLVGVWGQEGKPGKFGERGKPGEKGSKGHMGHLGE
TGAIGEQGEAGFLGPKGSRGTIGPVGAPGRMGQQGETGITGYEGHTGRQGPLGPPGPKGE
KGEQGEDSKVEGPPGPQGDRGPTGDRGDRGESGDPGYLGQPGVDGSRGKAGATGLPGHPG
PRGIQGLKGSKGDQGQKGKRGKQGESGTKGPPGPEGPPGPKGVVGREGLEGQPGMDGPPG
KDGDKGMKGEQGDDGEFGIIGKAGNSGKMGVPGLPGDQGSFGPKGERGLPGQTGYSGKRG
HIGGMGIPGKQGDQGNKGQPGDTGESGYPGVLGMFGPKGPPGDLGPAGIQGPKGPHGLMG
NVGATGPVGIIGPSGNTGPQGDKGSRGDTGVQGPRGPPGPRGPPGPPGLPGSMPFRREAI
GAAFQLIIDSHAALRSESYHDMDLPMLDHQGTEIFKTLHYLSTLIQSLKNPLGTHDNPAR
ICRDLKDCEQRMNDGTYWIDPNLGCSADSIEVTCNFSSGGQTCLKPITVSKLEMGVGRIQ
MNFLHLLSSEAVQHITIHCLNVPVWANSSSLEPSPTAVRFKAWSGGDMIQAGGLLEPHVV
KDECWIKDGRWHQTHFVFQTQDPNLLPILDVYNLPATEPGSHYHLEVGLVCFL
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgtactccaaactcaaaacagctggagtcggggggagagct
ctgatactctggactattctctatagtacctgttttgtgggactaacacaagcacaccct
gaagatgtggacgttctacaacagctggggcttacaggaacgaggaccggaggaggtgta
tcgtccacaggggcccgcttcgcaccccagggggtcatcccctttaagtctggggtcatc
ctcacccaacgggcccgggtccaggccccactgtcgtccgtcctaccccctgcctcctac
cccaccaccaacctgtctctgatcctcagcctgtgctcccaccgcgtcaacagcgccttc
cttttcaccatcctgtccaagaggaggagactgcagctgggggtccagttcatcctaggg
aaggtgctggtctacgtgggccagagggacttggtcagtttcgattatgacgttcacaac
ggccagtggcataacctggccctggacatccgaggccagagagtctcattatatacttct
tgtgggaagactagtgtacatgcagatctgcattctaaaaaagaggaggccctggatccc
gagggttctttcctcttgggtaagatggcccagaactcagtgcagtttgagggcgccgtt
tgccagtttgatatttacccctctgccaaggcagctcataactattgtaagtacattaag
aaacagtgcagggaggctgacaactacaggcccgtaaatctcccatccctgctacctctg
atcccctcagacccaaaccttactgtcgccctcctcacccctgtaatgccgactgaaata
cccaggaaggccgccagccctaatctggccttgactgaggaaagaaccaggactaagctt
gttgtcccaactaaccgccccacagtggcgccgaccctcactgtgcgtaagagttttgtg
acaccaaagcctggaactatgtccctgtatcgtcctgtggctgtcgccccgacaacggcc
aggcagggattaaagcgccccttagtggtcacgacccaaactgttactgtacccctcagg
accatcgaaacacaaacatccccaatgccaacgtcccgtggcgacagtttagctaaaaag
agctcagcagtggaaccaggtgttaaaacccagaaacccacggagagcagtttgactgct
gcaccacttctttccaccaccccaacgccaccaaagaagaagccagaccaccaaaccacg
gcagcatccaaacaaggctcttcttcttctgcttcttcttcaaacacctctgtcctcttc
gtacagaggaagcagctgaccactctggctgcacagaaacctgagcccagagtgaccaat
gtggaggctgtcaaagacacctcgtttatccctgtcactccgcctgccacagatggcttc
caaacctgggacttggaaccgacccagttctcattgctggctgggccgggaccacctgga
ctaaagggagaaccaggacccgcgggacttcaaggacctcctgggaagccagggacgccg
gggaagagggggcctcggggtcctcctggtccacacggaaacccaggtcgccccggcccg
cctggactcaagggacggaaaggagaccctgggctttcaccgggcagagctccaaaagga
gagagaggagagcgtggtgcttcaggacctcttggactgactggtcaagttggtagaaag
ggacagaaaggccatccaggtcctgctggtcaaccaggagattctggcgagcaaggggca
gacggaagcccaggggccaaaggttatcctggcaggcagggtttacctgggcctgttggc
attatggggcctaaaggagtccggggtttcataggaatccctggggtttttggccttcct
ggacctgatggtgagagaggaatccctggtgttcatgggaagaagggcaagatgggtagg
ccggggtttgctggggactttggcgagcggggaccaccaggaccagacggaaacccagga
gagctgggagcccctggtcctaatggagttcttggcctcattggagacatgggtcctcta
gggatgatgggtttgccaggaccatgtggactcaagggggtacccggaaacccaggagaa
ccaggactgaaaggtgataaggatgacgttggtcttccaggggaacaaggagagaatgga
ttccaaggtgacaagggtatccagggttcaccaggattgccaggcattcgagggaaacca
gggccacatggggtgacaggtgagccgggtcctgatggtatacctggccctccaggccaa
gagggtttcccaggagacatcggcccaccaggtcacaacggcccagagggcccaaagggg
aagccaggaaacagaggtttaccagggctcagaggaacagctggactagagggcgatgag
gggccacttggaccacctggacctacaggaccggagggcagacctggaaggcagggattc
ccagggaaaacaggtcccgaaggactgaagggcgagaccggaataactggagaggtcgga
aagcttggcgagagggggctgatgggtttcatcggccctgttggggagcctggcctcgca
ggagaaaaggggggccgtggcgagatgggattgcctggaccgccaggggaaaagggggcg
atgggtcatcctggaactcctggagagtgtggttcatcaggacctctagggataccaggt
ccagccggttcgaggggtctcggtgggatcagaggacctaaaggcaggaggggtccgagg
ggtcctgacggtccagctggggagaaggggtcagttggaggaaagggtcccgatggtcca
ccaggaaaactaggcttcccaggggagatgggaaagattggggagcctggggaagctggg
cctaaaggatttccaggtcgcaaaggaccctcaggagctccaggtgccaaaggaatagca
ggagagccgggacttactgggccaccaggaactatgggtccactgggagagatgggagtc
aagggtccaactggaaaggttggggagtggggactaccaggcgaatcaggagagaagggt
gccctcggaccagcaggaaacctcggagagcagggcctcatcggacagaggggtgagatg
gggatcgatggggatgccggacagagtggtcctgatggactcaagggcgagaagggggac
atgggaccggaggggggtacaggagagaggggtgacaccggactgaaaggaaaggaaggg
tctcccggacctcctggcttagtgggagtgtggggtcaggagggcaaacctggcaagttt
ggtgaaagaggaaaaccaggagagaagggcagcaaaggtcacatgggtcacctgggagag
actggggcaattggtgaacaaggagaagcaggatttcttgggccgaaggggtcgagagga
accattggaccagtgggtgcaccagggagaatgggccagcaaggtgaaacaggcatcaca
ggatacgagggccacacaggacggcaaggcccactgggacctcctggaccaaaaggtgaa
aagggtgaacagggggaggacagtaaggtggaaggccctcccggtccacaaggtgacaga
ggtcctaccggggacaggggagacagaggagaatcaggggacccaggatacctaggccag
ccaggggtggacggatcgagaggcaaagccggagcaactggactacctggacatcctgga
ccaaggggaatacagggtctgaaaggatccaaaggagatcaaggtcagaaaggcaaacgg
ggcaaacaaggcgagtctgggaccaaaggaccaccgggtcctgagggtcctcctggccca
aagggagtggtgggaagagagggccttgagggccaacctggaatggacgggcctcctggg
aaagatggtgacaaaggaatgaagggggagcaaggagacgacggagagtttggtatcatt
ggcaaagctggtaacagtggtaaaatgggcgtgccagggcttccaggcgatcagggctcc
tttggacccaagggtgagaggggtctccccggccaaactggatattcagggaaaagaggc
cacattggtggaatgggaattccaggaaaacagggtgaccaggggaacaaaggacagccc
ggtgacacaggtgaatcagggtacccaggggttctcgggatgttcggaccaaagggacct
ccaggagatctgggcccagccggcatacagggaccaaaagggccacatggcttgatgggt
aatgttggtgccacaggcccagtcggtatcatcggccccagtggtaatacaggtccccaa
ggtgacaaaggaagtcgaggggatacgggggtacagggaccaaggggccctcctggtcct
cgtggaccacccggacccccaggtctccctggttctatgccatttagaagggaggctatc
ggtgctgcttttcagctcattattgattcccatgctgcgctgaggtcagagagttaccac
gacatggacctgcccatgttggaccaccagggtacagagatattcaagaccctccactac
ctcagcaccttgatccagagcctgaagaacccactaggaacccacgacaaccccgcgcgc
atctgcagagacctcaaagactgtgaacagaggatgaatgatggaacttactggatcgac
ccaaacctcggctgctctgctgactccatcgaggtgacttgtaacttcagcagtggtggt
cagacctgtctgaaacccatcacagtatccaagctggagatgggggtgggtcgtatccag
atgaacttcctccatctactgagctctgaggcagtgcagcacatcaccatccactgcctg
aacgttcccgtgtgggccaacagctcctccctggagccctcccccaccgcggtgcgcttc
aaggcctggagcggaggagacatgatccaggctggagggctcctggagccccacgtagtg
aaggacgaatgctggatcaaagatggccgctggcaccagacccatttcgtcttccagacc
caggaccccaatttactccccatcctggatgtgtataacctaccggccacagagcctggc
tcgcactaccacctagaggtgggcctcgtgtgcttcttatag
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