Oncorhynchus tshawytscha (Chinook salmon): 112264819
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Entry
112264819 CDS
T05605
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4-like isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112264819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112264819
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112264819
Chromatin remodeling factors
NuRD complex
112264819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
DEAD
PHD_2
HMG_box
AAA_22
Motif
Other DBs
NCBI-GeneID:
112264819
NCBI-ProteinID:
XP_042151547
LinkDB
All DBs
Position
LG13:36019721..36049247
Genome browser
AA seq
1925 aa
AA seq
DB search
METPEVDRDEERAAPRSDSEGSDYNPGKKKKKNRGSTSKEKKRSSTSTDRNGGGKDKRKD
PEPEEEEDEDDDDDSLEPKTSSQLLDDWGMEDIDHVFSDEDYRSLTNYKAFSQYVRPLIA
AKNPKIAVSKMMMVLGAKWREFSTNNPLRGSAAATAALAAANVSAAVESMVAEVTPAPVA
EPQPPVAPPLKKAKTKEGKGPNARKKSRPTPKPAEKKKVATKKVAPLKIKLGGFNSKRKR
SSSEEDEPDVESDFDDASMNSVSVSDGSNSRSSRSKKPKSKPKKKKGLYSAVEEDGDGYE
TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMENAPEGTWSCPHCEKEGKQWEAREE
GSEEEEEEVEAEPEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWI
CPRCTCPPMKGKVQKILTWRWGDPPPPTPIPRPPDLPADQPDPAPLAGRPEREFFAKWSN
MSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSVDFGEGDEEKSTKRKAKDPLYAKM
EEKYYRFGIKIAWMMIHRILNHSQDKKNNVHYLIKWKDLAYDQATWEAEDMDIPEFDVFR
QQYWNHRELMMGDEGKPGKKIKVKGKTKRMDRPPENPVVDPTIKFERQPDYLDSTGGNLH
PYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI
INWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKRASKMKKDSSVKFHV
LLTSYELITIDMAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQN
NLEELFHLLNFLTPERFSNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMP
SKTELIVRVELSPMQKKYYKFILTRNFEALNTRSGGNQVSLLNVVMDLKKCCNHPYLFPV
AAMEAPKMPNGMYDGSALTKSAGKLTLMQKMMRKLKDGGHRVLIFSQMTKMLDLLEDFLE
NEGYKYERIDGSITGGMRQEAIDRFNAPGALQFAFLLSTRAGGLGINLATADTVIIYDSD
WNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPGLGSKT
GSMSKQELDDILKFGTEELFKDELGKGDKEAGYWKRVAGENKEEDSQVIHYDDMAVDRLL
DRNQESETPEETEIGSMNEYLGSFKVAQYVVKDEEEAEEEVQREIIKQEESVDPDYWEKL
LRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRGSRRADWQDDQSDNNSDYSVASEE
GDEDFDERAEGGAANSRRPNRKGMRGDRDKPLPPLLARVGGNIEVLGFNVRQRKAFLNAV
MRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLS
RQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMMELEESKKAAAAAAGARPDSPGKTPST
GTPADTQPNTPATAPKTPSTGTPADTQPNTPAPADDPSKTEDAVKDGEKEEKKDGEVEKE
ESRKTEDPEVNAIPDNEEKTPSPEPKEKDEGEPMETDKPTNGEAEKEKDGETAAETAPGG
EETKSPAAEAKMDVSEVKSEDSEAKAEEKKEKTEKMDTTPASEEKKEQKEEKDGVKAEEL
AKLQNGDSVKEGVAAGVSEEKKKAKTRFMFNIADGGFTELHSLWQNEERAATVTKKTNEI
WHRRHDYWLLAGIIQHGYARWQDIQNDVKFAILNEPFKAEMNRGNFLEIKNKFLARRFKL
LEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFSEVECLAESHQHLSKESMSGNKPANA
VLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLASRGPEPQPQQP
QLSQQ
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggagacccccgaggtggacagggacgaggagcgagcggcgccccgctctgacagcgag
ggcagcgactacaacccagggaagaagaagaagaagaacagggggagcacctccaaggag
aagaagaggagcagcaccagcactgacagaaacggcggaggaaaggacaagaggaaggac
cctgaacccgaggaagaggaggatgaggacgacgacgacgatagcttggagcctaagacg
tcgtcccagctcctggatgactggggaatggaggacattgaccacgtcttcagcgacgag
gactaccgctccctcaccaactacaaggccttcagtcaatatgtccgaccgctcatcgcg
gccaagaaccccaagattgccgtgtccaagatgatgatggtactgggtgccaagtggcgt
gagttcagcaccaacaatcccctgagaggctccgccgccgctactgcagccctggccgcc
gccaacgtgtctgccgccgtggagagcatggtggcggaggtcactcccgccccggtcgcc
gagccccagccaccggtcgccccgcctctgaaaaaggccaagaccaaagagggcaaaggt
cctaatgctcgtaagaagtccaggcccacccccaagcccgcagagaagaagaaagtggct
acaaagaaggtagctccgctcaagatcaaactaggaggcttcaacagcaagaggaaacgc
tcctcgagtgaagaggatgagcctgacgtggagagtgactttgacgacgccagcatgaac
agcgtgtccgtgtcagacggctccaacagccgcagcagccgatccaagaagcccaagagc
aagcccaagaagaagaagggtctgtactctgcagtcgaggaggacggtgacggttatgag
acggaccaccaggactactgtgaggtgtgccagcagggaggggagatcattctgtgcgac
acctgtccccgggcctaccacatggtgtgcctggaccccgacatggagaacgccccagag
ggcacctggagctgcccacactgcgagaaggagggcaaacagtgggaggcgcgggaggag
ggctcagaagaagaggaggaggaggtggaggcagagccggaggaggacgaccaccacatg
gagttctgcagggtgtgtaaggatggtggcgagctgctctgctgcgactcctgtccctcc
tcctaccacatccactgtctcaacccgcccctgcctgagatccccaacggagagtggatc
tgcccacgctgcacttgtccacccatgaagggcaaggtgcagaagattctgacgtggcgc
tggggcgacccccctccgcccacgcccatcccccgccccccagacctcccggctgaccag
cccgaccccgcccctctggccgggcgccctgagagggagttcttcgccaagtggagcaac
atgtcctactggcactgctcctgggtgtctgagctgcagttggagctgcactgtcaggtg
atgttcaggaactaccagaggaagaacgacatggacgagccgccttcagtagactttggc
gagggcgacgaggaaaagagcacgaagaggaaggccaaggacccgctctacgccaagatg
gaggagaagtactaccgctttggcatcaagatcgcctggatgatgattcaccgcatactc
aaccacagtcaggacaagaagaataacgtacactacctcatcaagtggaaagacctggcc
tacgaccaggccacctgggaggctgaggacatggacatcccagagtttgacgtcttcaga
cagcagtactggaaccacagggagctgatgatgggcgacgagggtaaaccagggaagaag
atcaaggtgaaaggcaagacgaagaggatggaccggcctcctgagaatcctgtcgttgat
cccaccatcaagtttgagcggcagcctgattacctggacagtacggggggcaacctgcac
ccctaccagctggagggtctcaactggctgcgtttctcctgggcacagggcacagacact
attctggctgacgagatgggactgggcaagactgtgcagactgccgtgttcctctactca
ctctacaaagagggtcactccaagggcccgttcctggtgagcgcccccctgtctaccatc
attaactgggaaagagagtttgagatgtgggccccggacatgtacgtggtgacctacgta
ggagacaaggacagcagagccgtcatccgagagaacgagttctccttcgagaacaacgcc
atccgcggaggcaagagggcttctaagatgaagaaagactcatcagtgaagttccatgtg
ctgctgacgtcctatgagttgatcaccatcgacatggccatcctaggttccatagattgg
gcctgtctggtggtcgatgaggcccacaggctcaaaaacaaccagtccaagttcttcaga
gtgctgaacaactatcctctccagcacaagctgctactgactggtacacctctacagaac
aacctggaagagttgttccacctcctcaacttcctcacgccagagagattcagtaacctg
gaggggttcctggaagagtttgctgacatcgccaaagaggaccagatcaagaagctgcac
gacatgctgggaccccacatgctcaggagactgaaggctgacgtcttcaaacacatgccc
tccaagacggagctcatcgtcagggtggagctcagccccatgcagaagaagtactacaaa
ttcatcctcacccgtaactttgaggccctgaacacgcgcagtggtggaaatcaagtatcc
ctgctcaacgtggtgatggacctcaagaagtgctgcaatcacccctacctcttccctgtg
gctgccatggaagccccaaagatgcccaatgggatgtacgacggtagcgccctcactaag
tctgccgggaaactgacgctaatgcaaaagatgatgaggaagctgaaagacggcgggcac
agagtactcatcttctctcagatgaccaagatgcttgacctgctggaggacttcctggag
aacgagggctacaagtacgagcgtatcgacggcagcatcaccgggggcatgagacaggag
gccatcgacagattcaatgctccgggagcgctgcagtttgccttcctgctgtcgacgaga
gctggaggtctgggtatcaacctggccaccgccgacaccgtcatcatctacgactccgac
tggaacccccacaacgacatccaggcgttcagcagagctcaccgtatcggacagaacaag
aaggtgatgatctaccgcttcgtcacaaaggcctctgtggaggagaggatcactcaggta
gccaagaagaagatgatgttgacccacctggtggtgcgtcctggtctgggctccaagacg
ggctccatgtccaaacaggagctggacgacatcctcaaattcggcacggaggagctgttc
aaggacgagcttggaaagggtgacaaagaagcaggttactggaagcgtgttgcaggtgag
aacaaggaggaggacagccaggtgatccactacgatgacatggcggtggacaggttgctg
gacaggaaccaggagtccgaaaccccggaggaaacggagatcgggagcatgaacgagtac
ctcggctccttcaaggtggcccagtacgtggtcaaggacgaggaggaggcggaggaggaa
gtgcagagggagatcatcaagcaggaggagagtgtcgacccagactactgggagaagctg
ctcaggcaccactatgagcagcagcaggaggacctggcccgcaacctgggcaagggcaag
cgcatccgcaagcaggtcaactacaacgacggctcccaggaggaccgaggtagtagacgg
gcagattggcaggatgaccaatcggacaacaactcggactactctgtggcctccgaggag
ggtgacgaggactttgatgagcgggcagaaggcggtgcagccaactctcgcagacccaac
aggaaaggcatgcggggcgaccgggacaagccactgccccccctgctggccagagtggga
ggcaacattgaggtgttgggcttcaacgttcgccagaggaaggccttcctgaatgcagtg
atgcgttatgggatgcctcctcaggacgccttcaccacccagtggctggtcagagacctg
cgcgggaaatctgagaaagagttcaaggcgtacgtctccctcttcatgaggcacctgtgc
gagcccggcgccgacggagccgagaccttcgccgacggcgtcccccgcgaagggttgtcg
cggcaacacgtactcacccgcatcggtgtgatgtcgctgatccgcaagaaggtccaggag
ttcgagcacgtcaacggccagtggtccatgccctggatgatggagctggaggagagtaaa
aaggctgcggccgctgcagctggagcccgccccgactccccagggaagaccccctccacg
ggcacgcctgcagacacgcagcccaacacgcccgccacagcccccaaaactccctccact
ggcacacccgcagacacgcaacccaacacgcctgccccagcagacgatccttcgaagacg
gaggacgccgtgaaggatggcgagaaagaggagaagaaagatggcgaggtggagaaggag
gagtccagaaagacggaagacccagaggtaaatgcgatccccgataacgaggagaagact
ccgtcccctgaaccaaaagagaaagatgaaggagagcccatggaaacagacaagcctacc
aacggagaggcggaaaaggagaaggacggcgagactgcagcggagactgctccgggagga
gaggagaccaagtctccagcagcagaggccaagatggacgtgtccgaggtcaaatcggaa
gactccgaggccaaagcagaagagaagaaagagaagacggagaagatggataccactcct
gcctcagaggaaaagaaagagcaaaaggaggagaaggatggcgtgaaggcggaggagctg
gccaagctgcagaacggggatagtgtgaaggagggagtggcggccggagtcagtgaggag
aagaagaaagccaagacgagattcatgttcaacatcgccgacggaggattcacagagctg
cactccttgtggcagaacgaggagagggccgccaccgtcaccaagaagaccaacgagatc
tggcaccgtcgccatgactactggcttctggctggcatcatacaacacggctacgcgcgt
tggcaggacatccagaacgacgtgaagttcgccatcctcaacgagcccttcaaggctgaa
atgaaccgaggcaacttcctggagataaaaaacaagtttctggccaggaggttcaagctg
ctggagcaggccctggtgatcgaggagcagctgcgccgggcggcctacctcaacatgtcg
gaggacccttcccacccctccatggccctcaacacgcgcttcagcgaggtggagtgtctg
gccgagtcccaccaacacctcagcaaggagtccatgtcggggaacaagcccgccaacgcc
gtcctgcacaaagtgctgaaacagctggaggagctgctcagtgacatgaaagccgacgtg
acccgtctcccggcaaccatcgcccggatacccccggtcgcagtgagactccagatgtcc
gagaggaacatcctcagccgcctggccagcagaggccccgaaccacagcctcaacaaccg
cagctgtcgcaacagtag
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