Oncorhynchus tshawytscha (Chinook salmon): 112265290 Help Entry 112265290         CDS       T05605                                  Definition (RefSeq) alpha-actinin-4-like isoform X1   KO K05699   actinin alpha 1/4 Organism otw  Oncorhynchus tshawytscha (Chinook salmon) Pathway otw04510   Focal adhesion otw04520   Adherens junction otw04530   Tight junction otw04810   Regulation of actin cytoskeleton Brite KEGG Orthology (KO) [BR:otw00001]  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     112265290    04520 Adherens junction     112265290    04530 Tight junction     112265290   09142 Cell motility    04810 Regulation of actin cytoskeleton     112265290  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:otw04131]     112265290   09183 Protein families: signaling and cellular processes    04812 Cytoskeleton proteins [BR:otw04812]     112265290    04147 Exosome [BR:otw04147]     112265290 Membrane trafficking [BR:otw04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     112265290 Cytoskeleton proteins [BR:otw04812]  Eukaryotic cytoskeleton proteins   Actin filaments / Microfilaments    Actin-binding proteins     Cross-linking proteins      112265290 Exosome [BR:otw04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    112265290   Exosomal proteins of colorectal cancer cells    112265290   Exosomal proteins of bladder cancer cells    112265290 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spectrin CH CAMSAP_CH EF-hand_1 EF-hand_6 Motif Other DBs NCBI-GeneID:  112265290 NCBI-ProteinID:  XP_024298210 LinkDB All DBs Position 13 AA seq 807 aa AA seqDB search MVDYHASNSQASSGGPAIYMDPREQENDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGT QIENIEEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDYIAGKGVKLVSI GAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFH ISWKDGLAFNALIHRHRPELIDYDKLRKDDPLTNLNNAFEVAEKYLDIPKMMDAEDIVGT LRPDEKAIMTYVSCFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLDWI RRTIPWLENRAPEKTMAEMQQKLEDFRGYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNR PAFMPSEGRMVSDINGSWHNLEGAEKGYEEWMLNEIRRLERLDHLAEKFRQKATIHESWT DGKEAMLTQKDYETASLSEVKALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSP SVNARCQKICEQWDALGSLTQSRRESLERTEKQLESIDELYLEYAKRAAPFNNWMEGAME DLQDMFIVHNIEEIQGLITAHEQFKSTLPEANKEREAIQAIQAEVQKIAQYNGIKLSGGN PYTTITPKTIDNKWDKVEQLVPQRDQALQEELAKQQSNDHLRRKFATQANIVGPWIQTKM EEIGRISIEMNGTLEDQLVNLREYEQSIIEYKPNIDQLEGDHQLIQEALIFDNKYTAYTM EHLRVGWEQLLTTIARTINEIENQILTRDAKGISQEQLHEYRTSFNHFDKDHSGGLMAEE FKACLISLGYDVENNKTGDGSLPASWA NT seq 2424 nt NT seq  +upstreamnt  +downstreamnt atggtagattatcacgcttctaatagtcaagcatcgtctggaggtccagccatttacatg gacccaagagaacaagaaaatgactgggaccgggacctgctgctggacccggcctgggag aaacagcagagaaagacgttcacggcctggtgcaactcccacctgaggaaagcaggcacg cagatcgagaacatcgaggaggacttcagggatggcctcaaactcatgctcctgctggag gtcatctcaggggaacggttacctaagcccgagagaggcaagatgagggtccacaagatc aacaacgttaacaaagctctggactacatcgccggcaaaggagttaagctggtgtccatt ggcgcggaggaaattgtggatggcaacgccaagatgaccctgggcatgatctggacaata atcctccgtttcgccatccaggacatctctgtggaagagacctctgccaaggagggcctg ctcttgtggtgccagaggaagaccgcgccctacaaaaacgtcaacgtgcagaacttccac atcagctggaaggatggccttgccttcaacgctctgatccacagacacaggccagagctc attgactacgacaagctaaggaaggatgaccccttgaccaacctgaacaatgcctttgag gtggctgagaagtacctggacatccccaagatgatggacgctgaagacatcgtgggcacg ctgaggcccgacgagaaggccatcatgacctatgtctcctgcttctatcacgccttctct ggcgcccagaaggctgagactgcagccaataggatctgcaaggtgctggctgtcaaccag gagaatgagcacctcatggaggactacgagaagctggccagtgacctgttggactggatc cgccggaccatcccgtggctggagaaccgggctccagagaagaccatggccgagatgcag cagaagctggaggacttccggggctaccgccgcgtccacaagccccccaaggtgcaggag aagtgtcagctggagatcaacttcaacaccctgcagaccaagctgaggctgagcaacagg ccagccttcatgccctctgaaggacgcatggtgtcggacatcaacgggtcgtggcacaac ctggagggggcggagaagggctacgaggagtggatgctcaacgagatccgtcgcctggag agactggaccacctggctgagaagttccgtcagaaagccaccatccacgagtcctggacc gatggtaaggaggccatgctgacccagaaggactatgagacagccagcctgtcggaggtc aaggctctgctgaggaaacacgaggcgtttgagtctgacctggccgcccaccaagaccgc gtggagcagatcgctgccatcgcacaggaactcaatgagctggactactacgactcccct agtgtgaacgcccgctgtcagaagatctgtgagcagtgggatgctctggggtctctcacc cagagccgcagggagtctctggagaggacagagaagcagctggagtccattgacgagctg tacctggagtacgccaagagggcggcacccttcaacaactggatggagggggccatggag gacctgcaggacatgttcatcgttcacaacatcgaagagatccagggcctaatcacagcc catgagcagtttaagtccaccctcccagaggccaacaaggagcgggaggccatccaggcc attcaggcggaggtgcagaagattgcccagtacaacggcatcaagctgagcgggggcaac ccctacaccaccatcacacccaagactatcgacaacaagtgggacaaggtggaacagctg gttccccagcgtgaccaggctctgcaggaggagctggccaagcagcagtccaatgaccac ctgcgccgcaagtttgccacccaggccaacatcgtcgggccctggatacagaccaaaatg gaggagattgggcggatatccattgagatgaatggaactctggaggaccagctggtgaac ctgagagagtatgagcagagcatcatagagtacaagcccaacatcgaccagctggaggga gaccatcagctcatccaggaggctctcatcttcgacaacaaatacaccgcctacaccatg gagcatctgcgggtgggctgggagcagctcctcaccaccatcgcccgcaccatcaacgag atcgagaaccagatcctgacacgtgacgccaagggcatcagccaggagcagctgcatgag taccgcacttccttcaaccactttgacaaggaccacagcgggggcctgatggctgaggag ttcaaggcgtgtctgatcagcctgggctacgatgtggagaataacaaaacgggcgatggg agtttgcccgcatcatgggcatag

Oncorhynchus tshawytscha (Chinook salmon): 112266874 Help Entry 112266874         CDS       T05605                                  Definition (RefSeq) alpha-actinin-4 isoform X1   KO K05699   actinin alpha 1/4 Organism otw  Oncorhynchus tshawytscha (Chinook salmon) Pathway otw04510   Focal adhesion otw04520   Adherens junction otw04530   Tight junction otw04810   Regulation of actin cytoskeleton Brite KEGG Orthology (KO) [BR:otw00001]  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     112266874    04520 Adherens junction     112266874    04530 Tight junction     112266874   09142 Cell motility    04810 Regulation of actin cytoskeleton     112266874  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:otw04131]     112266874   09183 Protein families: signaling and cellular processes    04812 Cytoskeleton proteins [BR:otw04812]     112266874    04147 Exosome [BR:otw04147]     112266874 Membrane trafficking [BR:otw04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     112266874 Cytoskeleton proteins [BR:otw04812]  Eukaryotic cytoskeleton proteins   Actin filaments / Microfilaments    Actin-binding proteins     Cross-linking proteins      112266874 Exosome [BR:otw04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    112266874   Exosomal proteins of colorectal cancer cells    112266874   Exosomal proteins of bladder cancer cells    112266874 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spectrin CH EFhand_Ca_insen EF-hand_1 EF-hand_8 EF-hand_6 CAMSAP_CH EF-hand_7 DUF349 Motif Other DBs NCBI-GeneID:  112266874 NCBI-ProteinID:  XP_024300533 LinkDB All DBs Position 14 AA seq 924 aa AA seqDB search MVDYHASNNQASSGGPAVYMDPREQENDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGT QIENIEEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDYIASKGVKLVSI GAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFH ISWKDGLAFNALIHRHRPELIDYDKLRKDDPLTNLNNAFEVAEKYLDIPKMMDAEDIVGT LRPDEKAIMTYVSCFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLEWI RRTIPWLENRAPEKTMAEMQQKLEDFRGYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNR PAFMPSEGRMVSDINGSWHNLEGAEKGYEEWMLNEIRRLERLDHLAEKFRQKATIHESWT DGKEAMLTQKDYETASLSEVKALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSP SVNARCQKICEQWDALGSLTQSRRESLERTEKQLESIDELYLEYAKRAAPFNNWMEGAME DLQDMFIVHNIEEIQGLITAHEQFKSTLPEANKEREAIQAIQAEVQKIAQYNGIKLSGGN PYTTITPKSIDDKWHKVEQLVPQRDRALQEELAKQQSNDHLRRKFATQANIVGPWIQTKM EEIGRISIEMNGTLEDQLVNLREYEQSIIEYKPNIDQLEGDHQLIQEALIFDNKYTAYTM EHLRVGWEQLLTTIARTINEIENQILTRDAKGISQEQLHEYRTSFNHFDKDHSGALMAEE FKACLISLGYDVENNKAKRTGQMDMDNYRALLVATGNSLGDAEFARIMGIVDPNNSGAVT FQAFIDFMSRETTDTDTADQVIASFKILAADKNFITAEELRRELPPDQAEYCIARMAPYS GPDAKPGALDYMSFSTALYGESDL NT seq 2775 nt NT seq  +upstreamnt  +downstreamnt atggtagattatcacgcttctaataatcaagcatcgtctggaggaccagccgtttacatg gacccaagagaacaagaaaatgattgggaccgggacctgctgctggacccggcctgggag aaacagcaaagaaagacgttcacggcctggtgcaactcccacctgaggaaagcaggcacg cagatcgagaacatcgaggaggacttcagggatggcctcaaactcatgctcctgctggag gtcatctcaggggaacggttacctaagcccgagagaggcaagatgagggtccacaagatc aacaacgttaacaaagcgctggactacatcgccagcaagggggtcaagctggtgtccatt ggcgcagaggaaattgtggatggcaacgccaagatgaccctgggcatgatctggacgatc atcctccgcttcgccatccaggacatctccgtggaagagacctctgccaaggagggcctg ctcctgtggtgccagaggaagactgcgccctacaaaaacgtcaacgtgcagaacttccac atcagctggaaggatggccttgccttcaacgctctgatccacagacacaggccagagctc attgactacgacaagctaaggaaggatgaccccttgaccaacctgaacaatgcctttgag gtggctgagaagtacctggacatccccaagatgatggatgctgaagacatcgtgggcacg ctgaggcctgacgagaaggccatcatgacctatgtctcctgcttctatcatgccttctct ggtgcccagaaggctgagactgcagccaataggatctgcaaggtgctggctgtcaaccag gagaatgagcacctgatggaggactacgagaagctggccagtgacctgttggagtggatc cgccggaccatcccgtggctggagaaccgggctccagagaagaccatggccgagatgcag cagaagctggaggacttccggggctaccgccgcgtccacaagccccccaaggtgcaggag aagtgtcagctggagatcaacttcaacaccctgcagaccaagctgaggctgagcaacagg cccgccttcatgccctccgagggacgcatggtgtcggatatcaacgggtcgtggcacaac ctggagggggcggagaagggctatgaggagtggatgctcaatgagatccgtcgcctggag agactggaccacctggctgagaagttccgtcagaaagccaccatccacgagtcctggacc gatggtaaggaggccatgctgacccagaaggactatgagacagccagcctgtcggaggtc aaggctctgctgaggaaacacgaggcgtttgagtctgacctggccgcccaccaagaccgc gtggagcagatcgctgccatcgcacaggaactcaatgagctggactactacgactcccct agtgtgaacgcccgctgtcagaagatctgtgagcagtgggatgctctggggtctctcacc cagagccgcagggagtctctggagaggacagagaagcagctggagtccattgacgagctg tacctggagtacgccaagagggcggcacccttcaacaactggatggagggggccatggag gacctgcaggacatgttcatcgttcacaacatcgaagagatccagggcctaatcacagcc catgagcagttcaagtctaccctcccagaggccaacaaggagcgggaggccatccaggcc attcaggccgaggtgcagaagattgcccagtacaatggcatcaagctgagcgggggcaac ccctacaccaccatcacacccaagagtatcgacgacaagtggcacaaggtggaacagctg gtgccccagcgtgaccgggccctgcaggaggagctggccaagcagcagtctaacgaccac ctgcgccgcaagtttgccacccaggccaacatcgtcgggccctggatacagaccaaaatg gaggagattgggcggatatccattgagatgaatggaactctggaggaccagctggtgaac ctgagagagtatgagcagagcatcatagagtacaagcccaacatcgaccagctggaggga gaccatcagctcatccaggaggctctcatcttcgacaacaagtacaccgcctacaccatg gagcacctgcgggtgggctgggagcagctcctcaccaccatcgcccgcaccatcaacgag atcgagaaccagatcctgacccgtgacgccaagggcatcagccaggagcagctgcatgag taccgcacttccttcaaccactttgacaaggaccacagcggggccctgatggctgaggag ttcaaggcgtgcctgatcagcctgggttacgatgtggagaataacaaagcgaagcgcaca gggcagatggacatggacaattaccgcgctctgctcgttgcgactggaaacagcctgggt gatgccgagtttgcccgcatcatgggcatagtggaccccaacaacagtggagctgtcacc ttccaggccttcatagacttcatgtcccgggagaccacggacaccgacacagccgaccag gtcatcgcctccttcaagatcttggctgcagacaagaacttcatcacggctgaggagctg aggcgtgagctgcctccagaccaggcagagtactgcatcgcccgcatggcgccctactcg ggccctgacgcgaagcccggagctctcgactacatgtccttctctaccgccctctacggg gagagtgacctctag

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