Oxynema aestuarii: HCG48_04560
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Entry
HCG48_04560 CDS
T06528
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03410
Base excision repair
oxy03430
Mismatch repair
oxy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCG48_04560 (recJ)
03430 Mismatch repair
HCG48_04560 (recJ)
03440 Homologous recombination
HCG48_04560 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_04560 (recJ)
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HCG48_04560 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HCG48_04560 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCG48_04560 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Mu-transpos_C
HTH_11
Motif
Other DBs
NCBI-ProteinID:
QIZ73593
UniProt:
A0A6H1U6D3
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All DBs
Position
1168250..1170604
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AA seq
784 aa
AA seq
DB search
MESPVEVPDRFLDAVRKYVPGCSGRYAAQLLWQRGIRDLPALAQFLDPKQYAPSDPFAFG
EEMHRAIDRLQLARERGEKVAIWGDFDADGVTATSVLWDGLGQFFDRPSQLSYYIPNRLS
ESHGLNEAGIERLARSGVTLIVTCDTGSTNLAEIERGNERGIDTIVTDHHTLLPDRPPVV
ALINPRSLPADSPLATLSGVAVAYKLVEALYLTLPEVPQDSLETLLDLVAIGLIADLVEL
RGDCRYLAQVGIERLHREYKKPEGDRHRPGIGYLLDLCNRNGDRPTDISFGIGPRINAVS
RIRGDASFCVELLTSRDRQRTRELAEETELANTRRKQLQQDTLKQVSKKLERVDLSTTTA
IAIADEQWPAGVLGLVAGQVAQEYGKPTILLRVDPDRGDRAVRFARGSARSVDRIDLYEL
VRKQAHLLHRFGGHPYAAGLSLAVENFPLFQEGIDRELREQFGKNEAIAASGIPVDLICT
VAELGKDLFQELRLLEPCGMGNPVPQLLIENCWFKHVWNKNIKDLKGNKIKYIKTEFKIC
DETAPQGFPGLWWGHYKEEIPETRCDAIVELDFNAYKKEYQVRIVALRAARAGSSGGATT
RNLKILDWRDRPQGERDAQGDRAVVLRECPKSWDEVQFWCHEAWRSGRPLAIAYDPPDLL
DAIEVWTEAIDRAEDLSRTGERVGRKDLCEILGIGDRTIDLYLEALRHLGFEIVSQHPQV
QLRRSLRPISDAVGDLERTRARFLAAVREEQFHRQYFYSVSVATLQAHGAAIVASAEEGL
ETNL
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atcgaatccccggtcgaagtgccggatcgatttctcgatgccgtccgcaagtacgttccg
ggatgttcgggacgctacgcggctcaactgctgtggcaacgcgggattcgcgacttgccc
gccttggctcaatttctcgaccccaaacagtacgccccgtccgatccatttgcctttggc
gaggaaatgcaccgggcgatcgatcgcctccagcttgcccgagaacggggtgaaaaggtc
gccatttggggggatttcgacgccgacggggtgacggcgaccagcgtgttatgggacggt
ttgggtcagtttttcgatcgcccttcccagctttcctactacatccccaaccgtttgagc
gaatctcacggtctcaacgaagcggggatcgagcgcttggcgcgatcgggggtgacactg
atcgtcacgtgcgatacgggcagtaccaacctcgccgaaattgaacgggggaacgaacgg
ggaatcgatacgatcgtcactgaccatcacacgttgttgcccgatcgcccgcccgtcgtc
gccctgatcaatccgcgatcgctcccggcggacagtccactcgccaccctctccggtgtc
gccgtcgcctataagttggtcgaagcactttatctaactctgccggaagtcccccaagat
tcgttagaaacgttgttagatttagtggcgatcggattgattgcggatttggtcgaattg
cgcggcgattgccgttatctggcgcaagtgggcatcgaacggctgcaccgagagtataaa
aaaccggaaggcgatcgccaccgtccgggaatcggttatttactggacttgtgcaaccgc
aacggcgatcgccccacggatatttctttcggaatcggtccgcgcatcaatgcggtcagt
cgcattcgaggggatgcgtcgttttgcgtggaactgctcaccagtcgcgaccgccaacgc
actcgcgaactggcggaagaaacggagttagccaatacgcggcgcaagcaattgcagcaa
gataccctcaagcaggtctcgaaaaaactcgaacgggtggatttgtctacgacgacggcg
atcgcgatcgcggacgaacaatggcccgccggggtgctcggattggtggcgggacaggtg
gcccaagaatacggcaaaccgacgattttactgcgcgtcgatccggaccggggcgatcgg
gcggtgagatttgcccgagggtcggcgcgatcggtcgatcgcatcgacctttacgaattg
gttcgcaaacaagcgcatctattgcatcgttttggcggtcatccctacgcggcggggttg
agtttggcggtggaaaattttccgttatttcaagaagggatcgatcgcgaactacgggag
cagtttgggaagaatgaggcgatcgccgcctcgggaattccggtggatttaatctgtacc
gtggcggagttggggaaagatttatttcaagaactgagactgttggaaccctgcgggatg
ggcaatcccgtcccgcaattactgatcgaaaattgttggtttaaacatgtttggaataaa
aatattaaagatttaaaagggaataaaattaaatatatcaagactgagtttaaaatttgc
gacgaaacggcgccgcagggctttccggggctatggtggggacattacaaagaggaaatt
ccggaaacgcgctgcgacgcgatcgtcgaactcgatttcaatgcttataagaaagaatat
caagtgagaatcgtagccttgcgcgcggcgcgagcgggatcgtccggcggcgctacgacc
aggaatttgaagatcctggactggcgcgatcgcccgcaaggggaacgagacgcacagggc
gatcgcgccgtggttttgcgcgagtgtcccaaaagttgggacgaggtgcaattctggtgt
cacgaggcgtggcggtcgggccgaccgttggcgatcgcctacgacccgccggatttactc
gacgcgatcgaggtctggactgaggcgatcgaccgggctgaggatctcagtcgcaccggg
gaacgggtcggacgcaaagacttgtgtgagatactagggatcggcgatcggacgattgat
ttatacttagaagctctccgtcacctggggttcgagatcgtctctcaacatccccaggtg
cagttacggcggagtttgcgcccgatctcggatgccgtcggcgatctggagcggactcgg
gctcgttttctcgccgccgttcgcgaagaacagtttcatcggcagtatttttattcggtt
tcggtcgctacattgcaagcccatggggcggcgatcgtcgcctcggcggaggagggcttg
gaaacgaacctgtag
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