KEGG   Pyrococcus abyssi: PAB2002Help
Entry
PAB2002           CDS       T00024                                 

Definition
(GenBank) lig DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pab  Pyrococcus abyssi
Pathway
pab03030  DNA replication
pab03410  Base excision repair
pab03420  Nucleotide excision repair
pab03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pab00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    PAB2002
   03410 Base excision repair
    PAB2002
   03420 Nucleotide excision repair
    PAB2002
   03430 Mismatch repair
    PAB2002
Enzymes [BR:pab01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PAB2002
    6.5.1.6  DNA ligase (ATP or NAD+)
     PAB2002
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PAB2002
DNA replication proteins [BR:pab03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PAB2002
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PAB2002
DNA repair and recombination proteins [BR:pab03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PAB2002
   NER (nucleotide excision repair)
    Other NER factors
     PAB2002
   MMR (mismatch exicision repair)
    Other MMR factors
     PAB2002
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 TPR_1 Sel1
Motif
Other DBs
NCBI-ProteinID: CAB49465
UniProt: P0CL75
LinkDB All DBs
Position
complement(514003..515682)
Genome map
AA seq 559 aa AA seqDB search
MRYIELAQLYQKLEKTTMKLIKTRLVADFLKKVPEDHLEFIPYLILGDVFPEWDERELGV
GEKLLIKAVSMATGIDSKEIENSVKDTGDLGESIALAVKKRKQKSFFSQPLTIKRVYQTL
VKVAETTGEGSQDKKMKYLANLFMDAEPIEAKYIARTVLGTMRTGVAEGLLRDAISLAFN
VKVELVERAYMLTSDFGFVAKIAKTEGNDGLAKVTIQIGKPIKPMLAQQAANIKEALLEM
GGEAEFEIKYDGARVQVHKDGEKVTIYSRRLENVTRAIPEIVEAIKEALKPTKAIVEGEL
VAIGEDGRPLPFQYVLRRFRRKYNIEEMMEKIPLELNLFDVLYVDGVSLIDTKFMERRKK
LEEIVETNGKVKIAENLITKNVEEAEQFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFT
KMLKPLIIKEEGKRVWIQPKVVIEVTYQEIQKSPKYRSGFALRFPRYVALREDKGPEDAD
TIERIAQLYELQERMKGKV
NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt
atgaggtacatagagctggcccaactttatcagaagttagaaaaaacaacaatgaagctt
attaaaacgaggcttgttgcggactttctcaagaaggttccggaggatcatctcgagttc
atcccctacttaatccttggcgacgtcttccccgagtgggatgaaagggagcttggagtg
ggtgaaaagttattgataaaggcagtatctatggcgacgggaatagactccaaggagata
gaaaactcggtaaaagatacgggtgatttgggtgaaagcatagctttagccgtaaagaag
aggaaacaaaagagcttcttctcgcaacccttaacgattaagagggtctaccaaaccctc
gtcaaagttgccgagacaactggtgaagggagccaggataagaagatgaagtaccttgca
aacctgttcatggatgctgagcctattgaagctaagtacatagcgagaacggtgctcgga
acgatgagaactggagtagccgagggactgctcagggatgcgatatccctagcatttaac
gtcaaagttgagctcgttgagagggcttacatgctaactagcgactttggattcgtcgca
aaaattgccaaaactgagggtaatgatggattagctaaggtgacaattcagattggtaag
ccaataaagcccatgctagcccaacaggcggccaatataaaagaggcccttcttgagatg
ggtggggaagccgagtttgagataaagtacgatggagctagggttcaagttcacaaagac
ggagagaaagttacaatttactcgaggagactcgaaaatgtgactagggcaatacccgaa
atcgttgaggcgataaaagaagccctaaaacctacaaaagctatagtagagggagaatta
gtcgctatcggagaagatgggagaccactcccgttccaatacgttctcaggaggtttaga
aggaagtacaacatcgaggagatgatggaaaagatacctctcgagttgaatcttttcgac
gtgctatatgttgatggggtaagcttgatagacacaaagttcatggagaggagaaagaag
ctagaggagatcgtagagacgaatggaaaagttaagatcgctgagaacttgataaccaag
aatgttgaggaggccgagcagttctacaagagagccctcgagatgggacacgaagggttg
atggccaaaaggttggatgcagtttacgagcccggtaacaggggtaagaagtggctcaag
ataaagccgacaatggagaatttagaccttgtgataataggggcagaatggggagaagga
agaagggcccatctcctcggttctttcatcctcggagcgtacgatcccgagactggtgaa
ttcttggaggttggaaaggttggaagtggattcactgatgatgacttagtggagttcacc
aagatgctaaagcccctcataataaaggaggaagggaagagggtctggattcaaccaaag
gtcgttatagaggtaacataccaagaaatccagaagagtccgaagtacaggagcgggttc
gcattgagattcccaaggtacgtggccctgagagaggataagggtccagaggatgcagat
acgatagagagaatagcccagctttacgaacttcaggagaggatgaagggaaaggtgtga

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