Candidatus Paracaedibacter acanthamoebae: ID47_11460
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Entry
ID47_11460 CDS
T03232
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
paca
Candidatus Paracaedibacter acanthamoebae
Pathway
paca03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
paca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ID47_11460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paca03400
]
ID47_11460
Enzymes [BR:
paca01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ID47_11460
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ID47_11460
DNA repair and recombination proteins [BR:
paca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ID47_11460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
IBR
Motif
Other DBs
NCBI-ProteinID:
AIK97215
UniProt:
A0A077B2I7
LinkDB
All DBs
Position
complement(2342954..2343790)
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AA seq
278 aa
AA seq
DB search
MPELPEVETVCRGLEQMLQGYQIDAVELRRLDLRYPFPPLMNERLEGTKVIEVERRAKYI
LMHTDLGHTWLIHLGMSGRIHELAGTDTPGKHDHAIIHLQDGRRIAYNDPRRFGYMDLLP
RAFIHQSIHLKNLGLEPLAPDLTAEIFHTLLSKAKRPIKTTLLDQRLVVGLGNIYVCEAL
WQSKIHPEEQASTLTKRQAEILLESARDILQKAIKAGGSTLKDYRQVNGELGYFQHTFSV
YDRETGACQRPSCSGTIKRMNQSGRSTFYCPSCQRRQS
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactccccgaagttgaaaccgtttgtcgtggtttagaacaaatgctgcaagga
tatcaaattgacgcagtcgaactgcgccgtttggatctacgctatcccttcccgcctctg
atgaatgagcgtttagagggaacaaaagtcatcgaggttgaacgccgtgcaaagtatatt
ttaatgcacaccgatttagggcatacctggttgattcatttaggtatgtctggccgtatc
catgagcttgctggaacagatacgcccggcaaacatgaccatgcgattattcatctgcag
gatggccggcgaattgcttacaatgatccgcggcgctttggctatatggatttgctgcct
cgagcctttatccatcaatccattcatctcaaaaatttaggcttagagccgttagctccc
gatttaacggcagaaatatttcatactctcctttctaaagcaaagcgtcccattaaaacc
accctgctcgatcaacgattggtcgtcggtcttggtaatatttatgtttgtgaagcgtta
tggcagtcaaaaattcaccccgaagaacaagcctccaccttaacaaaaaggcaagcggaa
attttgttagaatcagcccgagatatcttgcaaaaggctattaaagcgggtgggtcaacc
ttaaaagattatcggcaagtgaatggggagcttggatattttcagcacaccttttctgta
tatgatcgtgagacaggggcttgccaaaggccttcttgtagcggcacaataaaacgaatg
aatcaaagtgggcgatccacattttattgtcctagttgtcagaggaggcaatcatga
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