Pediococcus acidilactici: A4V11_03255
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Entry
A4V11_03255 CDS
T04512
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
3.6.4.13
]
Organism
paci
Pediococcus acidilactici
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paci03019
]
A4V11_03255
03009 Ribosome biogenesis [BR:
paci03009
]
A4V11_03255
Messenger RNA biogenesis [BR:
paci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V11_03255
Ribosome biogenesis [BR:
paci03009
]
Prokaryotic type
rRNA helicases
A4V11_03255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOW74083
LinkDB
All DBs
Position
complement(674190..675551)
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AA seq
453 aa
AA seq
DB search
MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIVEGQSVVGQSQTGSGKTHAFLLPI
FNQIDPAKNAIQAVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIAKLE
HHQPAIVIGTPGRVLDLLQARALNFRQVQYLVIDEADMTLDMGFLSAVDQIAASMPENLQ
MLVFSATIPQQLNVFLQKYMKHPAIEEIPVATTISPTIKNILISTKSQDKNNLIYQLLTM
GEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVAT
DLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYMPNEEAEVAEVEK
MGVKFIPQQLRNHELVDTYDRQRRQTRRLSQKKLDPTLVGLVKKKKKKVKPGYKRRIKKA
ISEKAIRDRRMEQHQAVREAKKAKMRQSRSKRR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatttcaaaagtttaatctaaaaccatttctcatgcaggctttggatcaaatt
ggttttgtgaaaccgactccggtccaagagcgtgtcatcccgctaattgtggaaggtcaa
agcgtagtgggccaatcccaaaccggaagcgggaaaacccacgcgtttttgctaccgatt
tttaatcaaatcgatccggccaaaaacgcgattcaagcggtaatcaccacgcctagtcgg
gagttagcttaccaaatctacgaagcggctaagcaattggccgctgcttcagaaacccca
attgaaattggtaattacgttggcggaactgacaaaaaacggcagattgctaaattagaa
caccaccaaccagcaattgtcatcggaactccgggccgggtgcttgatttacttcaagct
cgggcacttaacttccggcaagtccaatatctggtaattgacgaagcggatatgactttg
gacatgggctttttaagcgccgttgaccaaattgcggcaagtatgcccgaaaatctacaa
atgttggtcttttccgctacgatcccgcagcaattaaacgtctttttacaaaaatacatg
aagcacccggcaattgaagaaattccggtggcgactacgattagtcccacgattaaaaat
attttgatttctaccaagagtcaggataaaaacaacttgatttaccagttgttgacgatg
ggggaaccgtacttagccttagtatttactaatacaaaggaacgggcggacgaattaact
aactacctgaagtcccaagggctgccagtggctaagattcacggtggaattccgcctcgg
gaacggaaacgaatcatgaaagacatccaccgcttacgttaccaatacgtggtggcgacc
gatttagcggcgcggggaattgatatcgaaggggtctcgctagtaattaacgacgatatc
ccaactgatttagaattcttcattcaccgggtaggtcggactggccgaaatggtttacca
gggacggccattacgttatacatgcctaacgaagaagccgaagtggcagaagttgaaaaa
atgggggttaagtttattccccaacaattacgtaaccacgaactagtggatacttacgat
cggcaacggcggcagactcggcggttaagtcagaaaaaactggaccctaccttggtcggg
ttagttaaaaagaaaaagaagaaagttaaaccaggttataaacggcgcattaaaaaggca
atctctgaaaaggcaattcgcgaccggcggatggaacagcatcaagcagttcgtgaggct
aagaaagctaaaatgcggcaatcgcgttcgaagcgaagataa
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