Pediococcus acidilactici: A4V11_09615
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Entry
A4V11_09615 CDS
T04512
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
paci
Pediococcus acidilactici
Pathway
paci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V11_09615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paci03019
]
A4V11_09615
03400 DNA repair and recombination proteins [BR:
paci03400
]
A4V11_09615
Enzymes [BR:
paci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4V11_09615
Messenger RNA biogenesis [BR:
paci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4V11_09615
DNA repair and recombination proteins [BR:
paci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4V11_09615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AOW75264
UniProt:
A0A1D8RQ81
LinkDB
All DBs
Position
2022385..2024139
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AA seq
584 aa
AA seq
DB search
MDPQTVLKSNFGYDTFRPGQARVIDAVLHRQNVLAIMPTGGGKSLCYQIPALMQSGLTLV
VSPLISLMKDQVDTLVDNGIPATFINSTLDYMEINERFAAARNRQVKLLYISPERLDSDY
FDQLASLPIDLLAIDEAHCISQWGHDFRPSYLNLTDLVQHLPTRPTIIALTATATPRVAT
DIKERLGITEQVQTGFARENLAFKVVKNQDSDRFLMDYLKLNQDQSGIIYASTVKEVERL
HRILTKKKFNVTMYHGQLSKAERRQNQEDFLFDRVPVMIATNAFGMGIDKSNVRFVIHDQ
IPGSIEAYYQEAGRAGRDGLPSEAILLYKLRDVQIQHYYIESSERDEESKEVEYQKLQAM
SQYGNTQMCLQRYILNYFHEDGPDCGYCGNCLDTREAQDITIETQQVLSCMHRMGERFGK
EMVALVLTGSQNQRVKQFHFEKLSTYGLMKQKTKKQVTELIDYLVASGIIAMEGGQYPVL
KNTAAGLDILRGKQRVTRKVAVRAEKSLPTNDALFEELRQLRRDLAEEQHVPPFVIFSDK
TLRDMCAVLPETLDEMLDVKGIGENKLAKYGEQFLKVLQNYQEA
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatccacaaaccgttttaaaatctaactttggctacgatacctttcggccggggcaa
gcgcgcgtcattgacgccgtgcttcaccggcaaaacgtcttggcaatcatgcccactggg
ggcggcaagtcgctttgctaccaaattccggccctcatgcagtcgggattgaccctcgtg
gtttcaccgctcatttcgttaatgaaagatcaggtcgataccttggtggataacggcatt
cccgcaaccttcattaatagtacgttagattacatggaaattaacgaacgctttgcggcc
gcacgtaatcgacaggtgaaattgttgtacatttcgccagaacggttagattccgactac
tttgaccagctggcttccttaccgatcgatctattggcaattgacgaggcccactgtatt
tcacaatggggccatgattttcggcccagttacctaaacctaaccgacctagtgcaacat
ttgccaactcgaccgacgattattgcactgacggcaacggcgactccgcgggtggccacg
gacattaaggaacgtttaggaattaccgaacaggttcaaactggttttgcgcgtgaaaac
ttggcgtttaaagtggttaagaaccaggatagcgaccgcttcttaatggactacctcaag
ttaaaccaggaccagtccggaatcatctatgccagcacggttaaggaagtggaacgcctt
catcgaattttaactaagaaaaagttcaacgtgacgatgtatcacggacaacttagtaag
gcagagcgacgccaaaaccaagaggacttccttttcgaccgggtgccggtgatgattgcc
accaacgcgtttgggatgggaattgacaagagtaacgtccgttttgtcatccatgaccag
attcctggcagcattgaagcgtactaccaagaagcggggcgcgccggtcgggatggcctg
cctagtgaagcaatcctgctatataagttgcgggacgtgcaaattcaacattattacatt
gaaagttcggaacgggacgaggaaagtaaggaagtcgaatatcagaagctccaggcaatg
agtcagtacggcaacacccagatgtgtttgcaacgctacattttaaattacttccatgaa
gatggtccggattgtggatactgcgggaactgtttagacactcgcgaagcacaagacatc
accattgaaactcaacaagttttatcgtgcatgcaccgaatgggcgagcggtttggaaaa
gaaatggtggcactcgtattgaccggttcgcaaaaccagcgcgtcaagcagtttcatttt
gaaaagttatcgacgtacggtctaatgaagcaaaagaccaaaaagcaagttaccgagttg
atcgattacctagttgcttcgggaataatcgcgatggaaggtggccagtatcccgtcttg
aaaaatactgcggctgggctagatattttgcgtggtaagcagcgggtaacccgcaaagtg
gcggtcagagccgaaaaatcattgccaactaacgacgccttgtttgaagagttgcgtcag
ttacggcgtgatttagctgaagaacaacacgttccgccatttgtaatcttttctgataaa
acccttcgtgacatgtgcgcggtgcttccggaaacgttggatgaaatgttagacgttaag
ggaattggggaaaataaattagccaagtatggcgaacagttcctcaaagtattgcaaaat
taccaagaagcttag
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