Pigmentiphaga aceris: FXN63_05400
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Entry
FXN63_05400 CDS
T06198
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pacr
Pigmentiphaga aceris
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacr03032
]
FXN63_05400
03400 DNA repair and recombination proteins [BR:
pacr03400
]
FXN63_05400
Enzymes [BR:
pacr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FXN63_05400
DNA replication proteins [BR:
pacr03032
]
Prokaryotic type
DNA Topoisomerases
FXN63_05400
DNA repair and recombination proteins [BR:
pacr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FXN63_05400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QEI05341
UniProt:
A0A5C0AXH1
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All DBs
Position
1294577..1295617
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AA seq
346 aa
AA seq
DB search
MAAVVDDPIVCPVPGLRWVDDSGPGITRKILRGHFAYFDAKGKRIRDQAEIDRINALVIP
PAYTEVWISSDARGHIQATGRDARGRKQYRYHPDWHATRDADKYGSLIAFADVLPRIRRQ
VAKDLALPGLPREKVIAAIVSLLESTLIRIGSKKYALANRSFGLTTLRNRHAKVFGQTVR
FRFRGKSGVEHDVKIADRRLATIIRRCMEIPGQALFSCVDGPDSEPHAIDSGEVNDYLRS
AAGADVTAKDYRTWAGSVMAFDTLQESVWADETSAKRTLVEVTREVASRLGNTPAVCRKC
YIHPAIFAHYLEQALPDRRTPRDPRGLRADERRFLAFLTTVADASA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtcgtagacgacccgattgtctgtcctgtcccaggacttcgttgggtcgat
gacagcggtccgggcatcacccgaaagattctgcgtggccactttgcgtatttcgacgca
aagggcaagcggatacgcgatcaggcagaaatcgatcgtatcaatgcgctggtcattccg
cctgcctataccgaggtgtggatttccagcgatgcacgcgggcatattcaggccaccggc
cgtgatgcccgtggacgcaagcagtatcgctaccaccccgactggcacgccacccgtgat
gcggacaagtacggttcgctgatcgcgtttgccgacgtactgccgcgcatccgtcggcag
gtggcaaaagaccttgcccttcctgggctgcccagagaaaaagtcattgcggccatcgtg
agcctgctcgaatccacgttgattcgaatcggcagcaaaaagtacgcgctggccaaccgc
tctttcgggctgaccaccttgcgaaaccgtcatgccaaggttttcggacagacggtgcgt
tttcgttttcgtggcaaaagcggggtcgagcacgacgtcaagattgccgaccgtcggctg
gctaccatcattcgtcgttgcatggagattcccggccaggcactgttttcctgtgtcgat
gggcctgacagcgaaccgcacgccatcgactccggcgaagtgaacgactatcttcgcagc
gccgccggcgcagatgtcacggccaaggactatcggacctgggcagggtcggtcatggcc
ttcgataccttgcaggaaagcgtatgggccgacgaaaccagcgccaagcgcaccttggtg
gaagtcacacgcgaggtcgcgtccaggcttggcaatacccctgcggtctgtcgcaagtgc
tatatccatcccgcaatctttgcgcactacctggagcaagcgctgccagatcgtcgtacc
ccgcgcgaccctcgtggactgcgggcagacgaacggcgttttctggcttttctgacgacg
gtagctgacgccagcgcttga
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