Paenibacillus sp. FSL R5-0345: R50345_18545
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Entry
R50345_18545 CDS
T03333
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
paef
Paenibacillus sp. FSL R5-0345
Pathway
paef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50345_18545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paef03019
]
R50345_18545
Messenger RNA biogenesis [BR:
paef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R50345_18545
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
AP_endonuc_2
Lactamase_B_6
PEP_mutase
Motif
Other DBs
NCBI-ProteinID:
AIQ36448
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Position
complement(4088390..4090069)
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AA seq
559 aa
AA seq
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MSKKNNNDKLMIFALGGVGEIGKNMYVIQYGADIVVVDSGLKFPEEDMLGIDIVIPDISY
LTENRDKVRGIVLTHGHEDHIGGLPYVLKNLNVPVYGTRLTLGLVENKLKEANLLGDTKR
ILINEDSEIQLGSSLKVTFFRTNHSIPDSVGVCIETPEGNVVHTGDFKFDHTPVNGQFAN
LHRMAEIGQKGVLALLSDSTNAEKPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHR
IQQVVNAAESTGRKITVIGRSMVNVVSIASELGYLNVPDGMLIEPEEMNRMAANRVVVLC
TGSQGEPMSALTRMARSSHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVIY
SGSNSGVHVSGHGSQEELKLMLNLMKPKYFIPIHGEYRMQRKHALLAESVGVDSQNIFIT
EIGEIVEIQGGAARKAGKVTAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
NGAIVSGPDIISRGFVYVRESEGLLDEANRIVSSTLQRLMSEKVNEWASLKTSVKDSLGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaaaaacaacaacgataaattgatgattttcgcattgggcggagtcggagaa
atcgggaaaaacatgtatgtcattcaatatggagctgacatagtagtcgtggattcggga
ctgaagttcccggaagaagatatgctcggtattgatattgtaattcctgatatctcttat
ttgacagagaaccgtgacaaggtaagagggattgtgcttacccacggacacgaggatcac
atcggtggtctcccatatgtcctgaagaacttgaatgttccggtttatggaacaagactt
acattaggccttgtagagaacaaattgaaggaagcaaacttgctgggtgacaccaaacga
attttgatcaatgaagattcagaaattcaacttggaagctcgctcaaagttacgttcttc
agaacaaaccacagtattccggattccgtcggtgtgtgcatagaaacaccggaaggtaac
gtagttcatacgggagatttcaaatttgaccacactccagtcaacggtcaatttgcaaat
ctgcatcgtatggctgaaattggtcaaaagggtgtacttgcgcttttgtcggatagtacg
aatgctgagaaaccaggctttaccccatctgagaagaatgtcggtatcgttctggaagac
attttccgcaaggctgaacaacgtgtcgttgtagcaacttttgcttccaacgtgcaccgt
attcaacaagtggttaatgcagcagaatccacaggccgtaagattacagtaattggccgt
agtatggtaaacgttgtatccatcgcttctgagcttggatatttgaacgtaccagatggt
atgctgattgagcctgaagaaatgaacagaatggcagcgaaccgtgtcgttgttctttgc
acaggcagccaaggcgagccaatgtccgcattgacccgtatggcacgttccagtcatcgt
aaagtagatatcttgcctggtgatactgttatcattgcggcaacaccggtaccaggtaac
gagaaatatgtaggccgtaccattgatgaattgttccgtcttggcgctaacgttatttat
agcggttccaattccggcgttcacgtatccggtcacggtagccaggaagagcttaaactt
atgctcaacctgatgaaaccgaaatatttcattccaattcacggtgaatatcgtatgcag
cgcaaacatgcccttttggcagaatctgttggcgtagattctcagaacattttcattact
gaaatcggtgagattgtggaaattcaaggcggtgccgctcgtaaagctggtaaagtaacg
gctggtaacgtattgattgacggtctgggtgtaggtgatgtaggtaatattgtattgcgt
gaccgtaaactgctgtctcaggatggtattttggttgtcgtggttacacttagcaaacaa
aatggtgcgattgtctccggacctgacatcatttcccgtggtttcgtttatgttcgtgag
tccgaaggactgctcgacgaagcgaaccgaattgtttccagtacattgcaacgcctgatg
agtgagaaagtaaatgagtgggcttcgcttaaaacaagcgtaaaagattcgctcggtcgt
ttcttgtatgagcaaacgcgtcgtagaccgatgattttgccaattatcatggaagtgtaa
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