Paenibacillus sp. FSL H7-0357: H70357_00965
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Entry
H70357_00965 CDS
T03358
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
paeh
Paenibacillus sp. FSL H7-0357
Pathway
paeh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paeh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H70357_00965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paeh03019
]
H70357_00965
03016 Transfer RNA biogenesis [BR:
paeh03016
]
H70357_00965
Enzymes [BR:
paeh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H70357_00965
Messenger RNA biogenesis [BR:
paeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H70357_00965
Transfer RNA biogenesis [BR:
paeh03016
]
Prokaryotic type
tRNA degradation factors
H70357_00965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
DUF3438
Motif
Other DBs
NCBI-ProteinID:
AIQ15437
UniProt:
A0A089HWL1
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All DBs
Position
185662..188556
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AA seq
964 aa
AA seq
DB search
MITQEILLDFMRETAYKPLTYDELVSHFELQDSASFKAFEDLLLELEQDGRVVLTRNARY
GVPERMDLLRGRLQAHAKGFAFLIPDDRDHPDVYVHANDLKGAMNGDIVLVRVTSKSPSG
GRMEGEVVRIVKRGVLQTVGVFQSLETYGFVLPDDKRINRDIFIPKQSFMGAVDGEKVVV
RIVNYPEGRAAAEGEIIEILGHKDDPGVDILSVIRKHQLPEAFPSEVMTEAEQAPDSITD
EEIIQQGRRDLRGLNIVTIDGEDAKDLDDAVNVERLENGHYKLGVHIADVGYYVREGSEL
DKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFNEHMKVVKHDVFT
SVIRTKERMTYSNVRKIVEDEDPELLERYSPLIGDFRLMKELAMKLRDARMRRGAVDFDF
EESKIIVDENGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGYHVKGRGNSVHPRALQSLLEDIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVMREVIENGGALSQKRHDYLSSRMPDIAQQ
SSERERVAVEAERDTEQLKKAEYMQDKVGEEFEAMISSVTSFGMFIELENTVEGLIRISA
LSDDYYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAAGEHR
SYSGRGGKGGRPGTGGFSKPSGGKAGGKGRTGGKGKPGAVGAGKGKPGGALNAGRGKSGA
VGTGAWEAPRTDAAAGSGAPAGGRAKRGSGGPAEAARRAYAALNGEAGGSSAPRERSGGG
RGRGGEAGGGAGGRGISFGFGSGKGGYGAPAGGAGEQGAGELRGVDANTRFSSREDRGFE
SRSGSTEGKNKGRRKKNKSGVFIGPSVTPGNVETSDKVAAKRSDKGSNAEGAVRRKKKKK
KPQE
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
ttgataacacaggaaatattgcttgattttatgcgggagaccgcttataaaccgctcact
tatgacgaattggtaagccacttcgagttgcaggatagcgcgtcgtttaaagcgttcgag
gatttgctgctggagcttgaacaggatgggagagtcgtgctgacccggaatgcccgttat
ggcgtgccggaacggatggatttattgcgtggacggctgcaggcacatgcgaaggggttt
gcttttctaatcccggacgaccgtgatcatcccgatgtgtatgtacacgccaacgattta
aagggtgcgatgaacggggatatcgtactggtgcgtgtcacttcgaaaagtccgtccggc
gggcggatggaaggcgaagtggtgcggatcgtgaaaagaggtgtgctccagactgttggg
gtattccaaagcctggagacctacggttttgtgctgccggatgacaagcggattaaccgc
gatatctttattccgaagcagtcctttatgggagcggtcgacggcgagaaggttgtggtc
cgcattgtaaattacccggaaggccgcgctgcggctgaaggggaaatcattgaaatcctg
ggacataaggacgacccgggtgttgatattttatccgtaatccgtaagcaccagctgcct
gaggctttcccgtctgaagtgatgaccgaagcggagcaggcgccggattccattaccgat
gaagaaattatccagcagggacgccgcgatttgcgcgggctcaacattgtcaccatcgac
ggtgaggatgccaaggatctggatgatgcggtcaatgtggaacggctggagaatgggcat
tacaagctgggcgttcatatcgccgacgtcggctattatgtgcgcgaaggttcggagctc
gacaaggaagcttatgaccgcggatgcagcgtgtatctggtggaccgggtgattccgatg
ttgccgcaccgtctctctaacgggatttgcagtttgaacccgcaggtggaccggttgacg
atgtcctgtgagatggaatttaatgagcatatgaaggtcgtgaagcatgatgtctttacg
agtgtaatccgtaccaaagaaagaatgacttactccaatgtccgcaaaatcgtcgaagac
gaagatccggagctgctggagcggtacagtccgctgatcggggatttccgtctgatgaag
gaactggccatgaagctgcgcgatgcgcggatgcggcggggagcggttgattttgacttt
gaagaaagcaagatcattgtcgacgagaacggcaaagctgttgatatcgtaaaacgtgag
cgttcagtagccgagcaaattatcgaagagttcatgctggcggccaatgagacggtagcc
gagcatttccactggctaaaagtgccgttcctctaccggattcatgaagatccggatccg
gagaagctgcagaactttatggcctttgccgccaatttcggctaccacgtcaagggacgc
ggcaattctgtccacccgcgcgcgctgcagagcctgctggaggacattcaaggcaccaag
gagcagacagtcatcagcacgatgatgctgcgctccatgaagcaggctaagtatgatgcg
gagagcacgggccattttggacttgcggcggaatattattcccacttcacatcgccgatc
cgccggtacccggaccttgtcattcaccgcgtgatgcgtgaggtgatcgagaacggcgga
gccctaagccagaagcgtcatgattacctgtccagccggatgcctgacatcgcgcagcag
tcctctgaacgcgaacgcgtagcagtggaagcagagcgtgatacggagcagctgaagaaa
gcggaatatatgcaggataaggtcggcgaggaattcgaggcgatgatcagcagtgtaacc
agcttcggcatgttcatcgagctggaaaataccgtcgaaggtttaatccgtatcagcgcg
cttagcgatgattactaccacttcgacgaagctcatatggcgctcattggcgagcgcacc
tccaaggtgttccgcattggcgatgaggtgaagatccgcgtcgccaaggtcaacatggac
gaccacacgatcgacttcgagctggtcgacatgaagccgcgtgcggcgggcgagcaccgc
agctatagcggacgcggcggtaaaggcggccgtcctggcaccggcggcttcagcaagccg
tccggtggaaaagccggcggcaagggccgcaccggcggtaaaggcaagcccggcgctgtc
ggagcgggcaagggcaaacccggcggcgcactgaacgccggcagaggcaagtccggcgcg
gtgggaaccggcgcctgggaagcgccgcgcacagacgcggcggccggtagcggcgcgcct
gcaggcggacgcgccaagcgtggcagcggcggccctgcagaggccgcacgccgggcttac
gccgccctgaacggcgaagcgggcggcagcagtgcgccgcgcgagcgcagcggcggggga
cgtggccgcggcggagaggccggaggcggtgccgggggacgcggcatcagcttcggcttc
ggctcaggcaagggcggctacggcgcgccagccggcggcgcaggcgagcaaggtgccggc
gagctgcgcggcgttgacgcgaacacccggttcagcagccgggaggatcgcgggttcgag
agccgcagcggaagcacagaaggcaagaataaaggccgccgcaagaagaacaagagcggc
gtgttcattggcccttccgtgactccaggcaacgtggagacctccgacaaagtagccgct
aagcgcagcgacaaaggcagcaatgcggaaggcgcagtacgccgaaagaaaaagaagaaa
aaacctcaggagtaa
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